Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 HM13-212ENST00000469097 801 ntTSL 513.42□□□□□ -0.267e-8■□□□□ 9.7
LIN28BQ6ZN17 HNRNPH3-208ENST00000481819 2704 ntTSL 1 (best)12.1□□□□□ -0.473e-7■□□□□ 9.7
LIN28BQ6ZN17 HNRNPH3-205ENST00000469172 3356 ntTSL 210.42□□□□□ -0.743e-7■□□□□ 9.7
LIN28BQ6ZN17 BTK-206ENST00000470329 572 ntTSL 39.67□□□□□ -0.863e-7■□□□□ 9.7
LIN28BQ6ZN17 HBS1L-204ENST00000367826 2703 ntTSL 2 BASIC9.3□□□□□ -0.927e-6■□□□□ 9.7
LIN28BQ6ZN17 HNRNPH3-203ENST00000461310 648 ntTSL 59.29□□□□□ -0.923e-7■□□□□ 9.7
LIN28BQ6ZN17 ARL6IP1-204ENST00000562819 578 ntTSL 5 BASIC8.19□□□□□ -1.13e-7■□□□□ 9.7
LIN28BQ6ZN17 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.117e-6■□□□□ 9.7
LIN28BQ6ZN17 IPO11-201ENST00000325324 4356 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.133e-7■□□□□ 9.7
LIN28BQ6ZN17 IPO11-205ENST00000424533 3005 ntTSL 27.69□□□□□ -1.183e-7■□□□□ 9.7
LIN28BQ6ZN17 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC7.26□□□□□ -1.257e-6■□□□□ 9.7
LIN28BQ6ZN17 HNRNPH3-209ENST00000486854 635 ntTSL 27.22□□□□□ -1.253e-7■□□□□ 9.7
LIN28BQ6ZN17 NOL9-204ENST00000464383 835 ntTSL 56.85□□□□□ -1.313e-7■□□□□ 9.7
LIN28BQ6ZN17 ARL6IP1-205ENST00000563861 948 ntTSL 1 (best)6.51□□□□□ -1.373e-7■□□□□ 9.7
LIN28BQ6ZN17 HBS1L-216ENST00000533274 2102 ntTSL 25.75□□□□□ -1.497e-6■□□□□ 9.7
LIN28BQ6ZN17 HBS1L-209ENST00000526100 1600 ntTSL 25.4□□□□□ -1.557e-6■□□□□ 9.7
LIN28BQ6ZN17 NOL9-203ENST00000462798 638 ntTSL 24.13□□□□□ -1.753e-7■□□□□ 9.7
LIN28BQ6ZN17 XPOT-206ENST00000542958 1321 ntTSL 54.02□□□□□ -1.773e-7■□□□□ 9.7
LIN28BQ6ZN17 IPO11-210ENST00000507640 458 ntTSL 33.79□□□□□ -1.83e-7■□□□□ 9.7
LIN28BQ6ZN17 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.59□□□□□ -1.843e-7■□□□□ 9.7
LIN28BQ6ZN17 XPOT-203ENST00000538086 787 ntTSL 53.56□□□□□ -1.843e-7■□□□□ 9.7
LIN28BQ6ZN17 KHSRP-204ENST00000595112 745 ntTSL 317.02■□□□□ 0.329e-7■□□□□ 9.7
LIN28BQ6ZN17 KHSRP-210ENST00000599395 837 ntTSL 514.77□□□□□ -0.059e-7■□□□□ 9.7
LIN28BQ6ZN17 P4HB-213ENST00000484286 759 ntTSL 216.68■□□□□ 0.267e-44■□□□□ 9.7
LIN28BQ6ZN17 ALDOA-215ENST00000565355 538 ntTSL 517.42■□□□□ 0.383e-56■□□□□ 9.7
LIN28BQ6ZN17 ALDOA-217ENST00000566130 801 ntTSL 215.99■□□□□ 0.153e-56■□□□□ 9.7
LIN28BQ6ZN17 ALDOA-214ENST00000564688 613 ntTSL 512.78□□□□□ -0.363e-56■□□□□ 9.7
LIN28BQ6ZN17 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.432e-6■□□□□ 9.7
LIN28BQ6ZN17 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.62e-6■□□□□ 9.7
LIN28BQ6ZN17 MADD-201ENST00000311027 5990 ntAPPRIS P4 TSL 1 (best) BASIC11.17□□□□□ -0.622e-6■□□□□ 9.7
LIN28BQ6ZN17 MADD-207ENST00000402799 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.632e-6■□□□□ 9.7
LIN28BQ6ZN17 MADD-206ENST00000402192 5823 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.632e-6■□□□□ 9.7
LIN28BQ6ZN17 MADD-210ENST00000407859 5744 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.682e-6■□□□□ 9.7
LIN28BQ6ZN17 MADD-204ENST00000395336 5942 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.692e-6■□□□□ 9.7
LIN28BQ6ZN17 MADD-202ENST00000342922 6005 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.732e-6■□□□□ 9.7
LIN28BQ6ZN17 MADD-205ENST00000395344 4988 ntAPPRIS ALT2 TSL 2 BASIC9.71□□□□□ -0.852e-6■□□□□ 9.7
LIN28BQ6ZN17 PSME4-201ENST00000389993 6581 ntTSL 1 (best)14.48□□□□□ -0.093e-9■□□□□ 9.7
LIN28BQ6ZN17 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.233e-9■□□□□ 9.7
LIN28BQ6ZN17 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.467e-7■□□□□ 9.7
LIN28BQ6ZN17 TTC37-211ENST00000513232 797 ntTSL 34.91□□□□□ -1.627e-7■□□□□ 9.7
LIN28BQ6ZN17 TTC37-205ENST00000505578 664 ntTSL 34.77□□□□□ -1.657e-7■□□□□ 9.7
LIN28BQ6ZN17 TTC37-213ENST00000514952 2102 ntTSL 1 (best)2.79□□□□□ -1.967e-7■□□□□ 9.7
LIN28BQ6ZN17 HNF4A-203ENST00000372920 3340 ntTSL 1 (best)17.07■□□□□ 0.324e-7■□□□□ 9.7
LIN28BQ6ZN17 HNF4A-201ENST00000316099 6445 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.724e-7■□□□□ 9.7
LIN28BQ6ZN17 HNF4A-209ENST00000619550 4763 ntTSL 5 BASIC10.44□□□□□ -0.744e-7■□□□□ 9.7
LIN28BQ6ZN17 RPS25-201ENST00000524864 1078 ntTSL 215.49■□□□□ 0.075e-14■□□□□ 9.7
LIN28BQ6ZN17 PRNP-204ENST00000457586 855 ntTSL 1 (best)26.67■■□□□ 1.866e-8■□□□□ 9.6
LIN28BQ6ZN17 PRNP-202ENST00000424424 806 ntTSL 1 (best)20.93■□□□□ 0.946e-8■□□□□ 9.6
LIN28BQ6ZN17 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.49■■□□□ 1.031e-9■□□□□ 9.6
LIN28BQ6ZN17 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.931e-9■□□□□ 9.6
LIN28BQ6ZN17 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.084e-9■□□□□ 9.6
LIN28BQ6ZN17 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC14.25□□□□□ -0.134e-9■□□□□ 9.6
LIN28BQ6ZN17 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.314e-9■□□□□ 9.6
LIN28BQ6ZN17 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.464e-9■□□□□ 9.6
LIN28BQ6ZN17 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.04■□□□□ 0.961e-6■□□□□ 9.6
LIN28BQ6ZN17 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.221e-6■□□□□ 9.6
LIN28BQ6ZN17 AL133352.1-202ENST00000527595 1423 ntAPPRIS ALT2 TSL 216.26■□□□□ 0.191e-6■□□□□ 9.6
LIN28BQ6ZN17 AL133352.1-201ENST00000529568 1952 ntAPPRIS ALT2 TSL 214.84□□□□□ -0.031e-6■□□□□ 9.6
LIN28BQ6ZN17 NDUFB8-203ENST00000370322 713 ntTSL 2 BASIC13.66□□□□□ -0.221e-6■□□□□ 9.6
LIN28BQ6ZN17 AL133352.1-205ENST00000533549 582 ntAPPRIS ALT2 TSL 413.16□□□□□ -0.31e-6■□□□□ 9.6
LIN28BQ6ZN17 NDUFB8-204ENST00000464651 390 ntTSL 211.62□□□□□ -0.551e-6■□□□□ 9.6
LIN28BQ6ZN17 AL133352.1-204ENST00000528174 538 ntAPPRIS ALT2 TSL 310.64□□□□□ -0.711e-6■□□□□ 9.6
LIN28BQ6ZN17 MAGOH-204ENST00000495868 695 ntTSL 1 (best)11.46□□□□□ -0.575e-6■□□□□ 9.6
LIN28BQ6ZN17 JTB-203ENST00000368589 1216 ntTSL 2 BASIC24.93■■□□□ 1.588e-11■□□□□ 9.6
LIN28BQ6ZN17 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.518e-11■□□□□ 9.6
LIN28BQ6ZN17 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.68■□□□□ 0.18e-11■□□□□ 9.6
LIN28BQ6ZN17 JTB-204ENST00000428469 520 ntTSL 311.36□□□□□ -0.598e-11■□□□□ 9.6
LIN28BQ6ZN17 OAZ1-210ENST00000593012 1357 ntTSL 218.99■□□□□ 0.631e-8■□□□□ 9.6
LIN28BQ6ZN17 VPS29-204ENST00000548259 563 ntTSL 219.72■□□□□ 0.751e-9■□□□□ 9.6
LIN28BQ6ZN17 VPS29-211ENST00000553128 449 ntTSL 315.31■□□□□ 0.041e-9■□□□□ 9.6
LIN28BQ6ZN17 DNAJB11-203ENST00000464877 639 ntTSL 24.22□□□□□ -1.731e-7■□□□□ 9.6
LIN28BQ6ZN17 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC22.95■■□□□ 1.267e-9■□□□□ 9.6
LIN28BQ6ZN17 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.977e-9■□□□□ 9.6
LIN28BQ6ZN17 DGCR6L-203ENST00000443409 935 ntTSL 1 (best)18.59■□□□□ 0.577e-9■□□□□ 9.6
LIN28BQ6ZN17 HBG1-202ENST00000632727 369 ntTSL 3 BASIC8.74□□□□□ -1.011e-323■□□□□ 9.6
LIN28BQ6ZN17 PDCD6IP-209ENST00000473593 540 ntTSL 24.34□□□□□ -1.715e-8■□□□□ 9.6
LIN28BQ6ZN17 RPS4X-205ENST00000492695 355 ntTSL 38.02□□□□□ -1.138e-22■□□□□ 9.6
LIN28BQ6ZN17 RPS4X-203ENST00000470671 610 ntTSL 33.32□□□□□ -1.888e-22■□□□□ 9.6
LIN28BQ6ZN17 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC28.81■■■□□ 2.27e-8■□□□□ 9.6
LIN28BQ6ZN17 PTPRF-207ENST00000436724 2168 ntTSL 1 (best)22.01■■□□□ 1.117e-8■□□□□ 9.6
LIN28BQ6ZN17 PTPRF-214ENST00000496043 415 ntTSL 514.52□□□□□ -0.097e-8■□□□□ 9.6
LIN28BQ6ZN17 PTPRF-202ENST00000372405 1962 ntTSL 1 (best)14.39□□□□□ -0.117e-8■□□□□ 9.6
LIN28BQ6ZN17 PTPRF-208ENST00000437607 788 ntTSL 1 (best)13.84□□□□□ -0.197e-8■□□□□ 9.6
LIN28BQ6ZN17 PTPRF-213ENST00000481019 459 ntTSL 313.72□□□□□ -0.217e-8■□□□□ 9.6
LIN28BQ6ZN17 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.26■□□□□ 0.834e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-209ENST00000551800 773 ntTSL 519.64■□□□□ 0.734e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-210ENST00000551888 636 ntTSL 219.56■□□□□ 0.724e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-207ENST00000550419 919 ntTSL 319.38■□□□□ 0.694e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-208ENST00000551706 984 ntTSL 1 (best)19.23■□□□□ 0.674e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-204ENST00000547281 825 ntTSL 318.49■□□□□ 0.554e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-215ENST00000553237 952 ntTSL 218.11■□□□□ 0.494e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.06■□□□□ 0.484e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.194e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-203ENST00000546489 776 ntTSL 514.49□□□□□ -0.094e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-212ENST00000552388 694 ntTSL 314.49□□□□□ -0.094e-6■□□□□ 9.6
LIN28BQ6ZN17 CDK4-211ENST00000552254 769 ntTSL 210.26□□□□□ -0.774e-6■□□□□ 9.6
LIN28BQ6ZN17 DSCR8-203ENST00000465532 791 ntTSL 27.43□□□□□ -1.226e-8■□□□□ 9.6
LIN28BQ6ZN17 DSCR8-205ENST00000472602 766 ntTSL 37.39□□□□□ -1.236e-8■□□□□ 9.6
LIN28BQ6ZN17 DSCR8-207ENST00000495344 606 ntTSL 25.93□□□□□ -1.466e-8■□□□□ 9.6
LIN28BQ6ZN17 DSCR8-206ENST00000478613 716 ntTSL 24.95□□□□□ -1.626e-8■□□□□ 9.6
Retrieved 100 of 21,972 protein–RNA pairs in 487.6 ms