RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NISCHQ9Y2I1 1504 aa30.28■■■□□ 2.44
PTPRF-208ENST00000437607 CCDC180Q9P1Z9 1646 aa27.3■■□□□ 1.96
PTPRF-208ENST00000437607 ABCC9O60706 1549 aa27.3■■□□□ 1.96
PTPRF-208ENST00000437607 RB1CC1Q8TDY2 1594 aa25.96■■□□□ 1.75
PTPRF-208ENST00000437607 NACADO15069 1562 aa25.75■■□□□ 1.71
PTPRF-208ENST00000437607 DNAJC5BQ9UF47 199 aa25.72■■□□□ 1.71
PTPRF-208ENST00000437607 UNC13AQ9UPW8 1703 aa25.61■■□□□ 1.69
PTPRF-208ENST00000437607 DCAF8L2P0C7V8 631 aa25.45■■□□□ 1.66
PTPRF-208ENST00000437607 MYO15BQ96JP2 1530 aa25.36■■□□□ 1.65
PTPRF-208ENST00000437607 PABPN1Q86U42 306 aaKnown RBP eCLIP25.35■■□□□ 1.65
PTPRF-208ENST00000437607 BICRAQ9NZM4 1560 aa25.3■■□□□ 1.64
PTPRF-208ENST00000437607 ZCCHC6Q5VYS8 1495 aaKnown RBP25.08■■□□□ 1.6
PTPRF-208ENST00000437607 DCAF1Q9Y4B6 1507 aa25.01■■□□□ 1.59
PTPRF-208ENST00000437607 SCRIBQ14160 1630 aa24.83■■□□□ 1.57
PTPRF-208ENST00000437607 SHROOM4Q9ULL8 1493 aa24.83■■□□□ 1.56
PTPRF-208ENST00000437607 CC2D2AQ9P2K1 1620 aa24.73■■□□□ 1.55
PTPRF-208ENST00000437607 EIF4G1Q04637 1599 aaKnown RBP24.63■■□□□ 1.53
PTPRF-208ENST00000437607 CECR2Q9BXF3 1484 aa24.58■■□□□ 1.53
PTPRF-208ENST00000437607 NCAPD3P42695 1498 aa23.75■■□□□ 1.39
PTPRF-208ENST00000437607 SMARCA4P51532 1647 aa23.7■■□□□ 1.38
PTPRF-208ENST00000437607 ATAD2BQ9ULI0 1458 aa23.68■■□□□ 1.38
PTPRF-208ENST00000437607 DNAJC5Q9H3Z4 198 aa23.64■■□□□ 1.37
PTPRF-208ENST00000437607 HMGXB3Q12766 1538 aa23.6■■□□□ 1.37
PTPRF-208ENST00000437607 SMARCA2P51531 1590 aa23.6■■□□□ 1.37
PTPRF-208ENST00000437607 CUX2O14529 1486 aa23.56■■□□□ 1.36
PTPRF-208ENST00000437607 ERCC6Q03468 1493 aa23.53■■□□□ 1.36
PTPRF-208ENST00000437607 BAZ1AQ9NRL2 1556 aaPredicted RBP23.5■■□□□ 1.35
PTPRF-208ENST00000437607 NESP48681 1621 aa23.47■■□□□ 1.35
PTPRF-208ENST00000437607 PEG3Q9GZU2 1588 aa23.46■■□□□ 1.35
PTPRF-208ENST00000437607 BAZ1BQ9UIG0 1483 aaKnown RBP23.42■■□□□ 1.34
PTPRF-208ENST00000437607 MROH2BQ7Z745 1585 aa23.35■■□□□ 1.33
PTPRF-208ENST00000437607 THOC2Q8NI27 1593 aaKnown RBP23.31■■□□□ 1.32
PTPRF-208ENST00000437607 KIF21AQ7Z4S6 1674 aa23.28■■□□□ 1.32
PTPRF-208ENST00000437607 LAMC3Q9Y6N6 1575 aa23.27■■□□□ 1.32
PTPRF-208ENST00000437607 WIZO95785 1651 aa23.13■■□□□ 1.29
PTPRF-208ENST00000437607 PDS5BQ9NTI5 1447 aa23.05■■□□□ 1.28
PTPRF-208ENST00000437607 CADPSQ9ULU8 1353 aa22.99■■□□□ 1.27
PTPRF-208ENST00000437607 MRC2Q9UBG0 1479 aa22.92■■□□□ 1.26
PTPRF-208ENST00000437607 WDR62O43379 1518 aa22.91■■□□□ 1.26
PTPRF-208ENST00000437607 CEP164Q9UPV0 1460 aa22.79■■□□□ 1.24
PTPRF-208ENST00000437607 RSF1Q96T23 1441 aaPredicted RBP22.78■■□□□ 1.24
PTPRF-208ENST00000437607 FANCD2Q9BXW9 1451 aa22.76■■□□□ 1.23
PTPRF-208ENST00000437607 TOP2AP11388 1531 aaKnown RBP22.75■■□□□ 1.23
PTPRF-208ENST00000437607 CFTRP13569 1480 aa22.74■■□□□ 1.23
PTPRF-208ENST00000437607 PRDM2Q13029 1718 aa22.72■■□□□ 1.23
PTPRF-208ENST00000437607 URB2Q14146 1524 aaKnown RBP22.62■■□□□ 1.21
PTPRF-208ENST00000437607 TRIM41Q8WV44 630 aa22.52■■□□□ 1.2
PTPRF-208ENST00000437607 CCDC88BA6NC98 1476 aa22.48■■□□□ 1.19
PTPRF-208ENST00000437607 OSCARQ8IYS5 282 aa22.39■■□□□ 1.17
PTPRF-208ENST00000437607 ZNF608Q9ULD9 1512 aaPredicted RBP22.36■■□□□ 1.17
PTPRF-208ENST00000437607 TOPBP1Q92547 1522 aa22.35■■□□□ 1.17
PTPRF-208ENST00000437607 IFT140Q96RY7 1462 aa22.33■■□□□ 1.16
PTPRF-208ENST00000437607 RIMBP3CA6NJZ7 1639 aa22.28■■□□□ 1.16
PTPRF-208ENST00000437607 RIMBP3BA6NNM3 1639 aa22.28■■□□□ 1.16
PTPRF-208ENST00000437607 RIMBP3Q9UFD9 1639 aa22.28■■□□□ 1.16
PTPRF-208ENST00000437607 EIF4G3O43432 1585 aaKnown RBP22.27■■□□□ 1.16
PTPRF-208ENST00000437607 DNMBPQ6XZF7 1577 aa22.27■■□□□ 1.16
PTPRF-208ENST00000437607 ABCC8Q09428 1581 aa22.23■■□□□ 1.15
PTPRF-208ENST00000437607 TARBP1Q13395 1621 aaKnown RBP22.23■■□□□ 1.15
PTPRF-208ENST00000437607 CHD1O14646 1710 aa22.21■■□□□ 1.15
PTPRF-208ENST00000437607 ARHGEF11O15085 1522 aa22.14■■□□□ 1.13
PTPRF-208ENST00000437607 AQRO60306 1485 aaKnown RBP eCLIP22.1■■□□□ 1.13
PTPRF-208ENST00000437607 POLA1P09884 1462 aaPredicted RBP22.1■■□□□ 1.13
PTPRF-208ENST00000437607 RAD54L2Q9Y4B4 1467 aa22.03■■□□□ 1.12
PTPRF-208ENST00000437607 SOGA1O94964 1423 aa21.95■■□□□ 1.1
PTPRF-208ENST00000437607 FGD5Q6ZNL6 1462 aa21.95■■□□□ 1.1
PTPRF-208ENST00000437607 CUX1P39880 1505 aa21.95■■□□□ 1.1
PTPRF-208ENST00000437607 WDR97A6NE52 1622 aa21.95■■□□□ 1.1
PTPRF-208ENST00000437607 ARAP1Q96P48 1450 aa21.92■■□□□ 1.1
PTPRF-208ENST00000437607 TDRD9Q8NDG6 1382 aaKnown RBP21.92■■□□□ 1.1
PTPRF-208ENST00000437607 FBLN2P98095 1184 aa21.88■■□□□ 1.09
PTPRF-208ENST00000437607 CYB5RLQ6IPT4 315 aa21.88■■□□□ 1.09
PTPRF-208ENST00000437607 SNAPC4Q5SXM2 1469 aa21.88■■□□□ 1.09
PTPRF-208ENST00000437607 CLASP1Q7Z460 1538 aa21.86■■□□□ 1.09
PTPRF-208ENST00000437607 PBRM1Q86U86 1689 aa21.86■■□□□ 1.09
PTPRF-208ENST00000437607 MAGI1Q96QZ7 1491 aaPredicted RBP21.81■■□□□ 1.08
PTPRF-208ENST00000437607 SYNJ1O43426 1573 aa21.79■■□□□ 1.08
PTPRF-208ENST00000437607 GRIN2BQ13224 1484 aa21.78■■□□□ 1.08
PTPRF-208ENST00000437607 ABCA5Q8WWZ7 1642 aa21.74■■□□□ 1.07
PTPRF-208ENST00000437607 SYNJ2O15056 1496 aa21.74■■□□□ 1.07
PTPRF-208ENST00000437607 CHMP7Q8WUX9 453 aaPredicted RBP21.71■■□□□ 1.07
PTPRF-208ENST00000437607 GAPVD1Q14C86 1478 aa21.71■■□□□ 1.07
PTPRF-208ENST00000437607 ABCA10Q8WWZ4 1543 aa21.69■■□□□ 1.06
PTPRF-208ENST00000437607 TRHP20396 242 aaPredicted RBP21.65■■□□□ 1.06
PTPRF-208ENST00000437607 BIVM-ERCC5R4GMW8 1640 aa21.62■■□□□ 1.05
PTPRF-208ENST00000437607 SUPT5HO00267 1087 aaKnown RBP21.6■■□□□ 1.05
PTPRF-208ENST00000437607 TOP2BQ02880 1626 aa21.58■■□□□ 1.04
PTPRF-208ENST00000437607 ADAMTS12P58397 1594 aa21.57■■□□□ 1.04
PTPRF-208ENST00000437607 ERCC6L2Q5T890 1561 aa21.54■■□□□ 1.04
PTPRF-208ENST00000437607 GRIN2AQ12879 1464 aa21.53■■□□□ 1.04
PTPRF-208ENST00000437607 CEP170Q5SW79 1584 aa21.53■■□□□ 1.04
PTPRF-208ENST00000437607 WRNQ14191 1432 aaPredicted RBP eCLIP21.52■■□□□ 1.042e-8■■■■■ 75.2
PTPRF-208ENST00000437607 SHROOM2Q13796 1616 aa21.47■■□□□ 1.03
PTPRF-208ENST00000437607 NUP160Q12769 1436 aa21.46■■□□□ 1.03
PTPRF-208ENST00000437607 ERICH3Q5RHP9 1530 aa21.42■■□□□ 1.02
PTPRF-208ENST00000437607 FHAD1B1AJZ9 1412 aa21.4■■□□□ 1.02
PTPRF-208ENST00000437607 KIF13AQ9H1H9 1805 aa21.33■■□□□ 1.01
PTPRF-208ENST00000437607 RUSC2Q8N2Y8 1516 aa21.27■■□□□ 1
PTPRF-208ENST00000437607 PRG4Q92954 1404 aaPredicted RBP21.23■□□□□ 0.99
PTPRF-208ENST00000437607 JPH4Q96JJ6 628 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms