Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14□□□□□ -0.17
CX3CR1P49238 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CR1P49238 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14□□□□□ -0.17
CX3CR1P49238 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14□□□□□ -0.17
CX3CR1P49238 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14□□□□□ -0.17
CX3CR1P49238 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CX3CR1P49238 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14□□□□□ -0.17
CX3CR1P49238 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CR1P49238 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14□□□□□ -0.17
CX3CR1P49238 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CR1P49238 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14□□□□□ -0.17
CX3CR1P49238 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14□□□□□ -0.17
CX3CR1P49238 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CX3CR1P49238 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CX3CR1P49238 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14□□□□□ -0.17
CX3CR1P49238 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CR1P49238 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CR1P49238 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14□□□□□ -0.17
CX3CR1P49238 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CX3CR1P49238 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.99□□□□□ -0.17
CX3CR1P49238 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.99□□□□□ -0.17
CX3CR1P49238 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CR1P49238 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CR1P49238 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CR1P49238 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
CX3CR1P49238 PPT1-215ENST00000641471 2368 ntBASIC13.99□□□□□ -0.17
CX3CR1P49238 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 FAM220BP-201ENST00000377689 816 ntBASIC13.99□□□□□ -0.17
CX3CR1P49238 MIR574-201ENST00000385209 96 ntBASIC13.99□□□□□ -0.17
CX3CR1P49238 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.99□□□□□ -0.17
CX3CR1P49238 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 AC004832.2-201ENST00000426397 482 ntBASIC13.99□□□□□ -0.17
CX3CR1P49238 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CR1P49238 ACTG1P14-201ENST00000446382 1122 ntBASIC13.99□□□□□ -0.17
CX3CR1P49238 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
CX3CR1P49238 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CR1P49238 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 PGAM5P1-201ENST00000518923 814 ntBASIC13.99□□□□□ -0.17
CX3CR1P49238 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.99□□□□□ -0.17
CX3CR1P49238 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC13.99□□□□□ -0.17
CX3CR1P49238 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CR1P49238 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 BNIP3P1-202ENST00000550043 1585 ntBASIC13.99□□□□□ -0.17
CX3CR1P49238 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 UXT-AS1-201ENST00000590504 1525 ntBASIC13.99□□□□□ -0.17
CX3CR1P49238 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.99□□□□□ -0.17
CX3CR1P49238 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.99□□□□□ -0.17
CX3CR1P49238 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CX3CR1P49238 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CX3CR1P49238 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CX3CR1P49238 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CX3CR1P49238 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
CX3CR1P49238 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CX3CR1P49238 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.98□□□□□ -0.17
CX3CR1P49238 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.98□□□□□ -0.17
CX3CR1P49238 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CX3CR1P49238 AC136621.1-201ENST00000624017 2304 ntBASIC13.98□□□□□ -0.17
CX3CR1P49238 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CX3CR1P49238 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC13.98□□□□□ -0.17
CX3CR1P49238 SSR4P1-203ENST00000599569 2260 ntBASIC13.98□□□□□ -0.17
CX3CR1P49238 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.98□□□□□ -0.17
CX3CR1P49238 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CX3CR1P49238 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CX3CR1P49238 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.98□□□□□ -0.17
CX3CR1P49238 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CX3CR1P49238 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CX3CR1P49238 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.98□□□□□ -0.17
CX3CR1P49238 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms