Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
LINC00643Q86TS7 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 SH3BP2-203ENST00000442312 9211 ntAPPRIS ALT2 TSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 TMEM198B-204ENST00000484016 896 ntBASIC9.86□□□□□ -0.83
LINC00643Q86TS7 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 AC024257.2-201ENST00000549699 147 ntBASIC9.86□□□□□ -0.83
LINC00643Q86TS7 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 ABHD17AP5-201ENST00000580133 923 ntBASIC9.86□□□□□ -0.83
LINC00643Q86TS7 AC015802.1-201ENST00000588104 1449 ntBASIC9.86□□□□□ -0.83
LINC00643Q86TS7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 AC131212.4-201ENST00000623606 975 ntBASIC9.86□□□□□ -0.83
LINC00643Q86TS7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 PCDHB18P-202ENST00000526308 3197 ntBASIC9.86□□□□□ -0.83
LINC00643Q86TS7 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC9.86□□□□□ -0.83
LINC00643Q86TS7 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 REXO1L1P-201ENST00000379010 6598 ntBASIC9.85□□□□□ -0.83
LINC00643Q86TS7 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 AC023024.2-201ENST00000623561 1993 ntBASIC9.85□□□□□ -0.83
LINC00643Q86TS7 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
LINC00643Q86TS7 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms