RNA–Protein interactions for RNA: ENST00000537435.2

USP44-203, Transcript of ubiquitin specific peptidase 44, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP44, Length 2,499 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-203ENST00000537435 NISCHQ9Y2I1 1504 aa29.71■■■□□ 2.35
USP44-203ENST00000537435 SHROOM4Q9ULL8 1493 aa25.32■■□□□ 1.64
USP44-203ENST00000537435 CCDC180Q9P1Z9 1646 aa25.23■■□□□ 1.63
USP44-203ENST00000537435 ZCCHC6Q5VYS8 1495 aaKnown RBP25.14■■□□□ 1.62
USP44-203ENST00000537435 SUPT5HO00267 1087 aaKnown RBP24.85■■□□□ 1.57
USP44-203ENST00000537435 DCAF8L2P0C7V8 631 aa24.61■■□□□ 1.53
USP44-203ENST00000537435 DCAF1Q9Y4B6 1507 aa24.39■■□□□ 1.5
USP44-203ENST00000537435 CHIC1Q5VXU3 224 aa24.19■■□□□ 1.46
USP44-203ENST00000537435 MYO15BQ96JP2 1530 aa24.08■■□□□ 1.44
USP44-203ENST00000537435 ABCC9O60706 1549 aa23.71■■□□□ 1.39
USP44-203ENST00000537435 SCRIBQ14160 1630 aa23.65■■□□□ 1.38
USP44-203ENST00000537435 RSF1Q96T23 1441 aaPredicted RBP23.52■■□□□ 1.36
USP44-203ENST00000537435 HRCP23327 699 aa23.47■■□□□ 1.35
USP44-203ENST00000537435 LOC105371045A0A1W2PR82 267 aa23.45■■□□□ 1.34
USP44-203ENST00000537435 PCGF6Q9BYE7 350 aa23.44■■□□□ 1.34
USP44-203ENST00000537435 NACADO15069 1562 aa23.34■■□□□ 1.33
USP44-203ENST00000537435 RB1CC1Q8TDY2 1594 aa23.26■■□□□ 1.31
USP44-203ENST00000537435 CECR2Q9BXF3 1484 aa23.16■■□□□ 1.3
USP44-203ENST00000537435 TRIM41Q8WV44 630 aa23.16■■□□□ 1.3
USP44-203ENST00000537435 MROH2BQ7Z745 1585 aa23.09■■□□□ 1.29
USP44-203ENST00000537435 TRIM26Q12899 539 aaPredicted RBP23.01■■□□□ 1.27
USP44-203ENST00000537435 PPARGC1BQ86YN6 1023 aaKnown RBP22.95■■□□□ 1.26
USP44-203ENST00000537435 FAM9AQ8IZU1 332 aaPredicted RBP22.95■■□□□ 1.26
USP44-203ENST00000537435 WIZO95785 1651 aa22.95■■□□□ 1.26
USP44-203ENST00000537435 BAZ1AQ9NRL2 1556 aaPredicted RBP22.82■■□□□ 1.24
USP44-203ENST00000537435 EHMT2Q96KQ7 1210 aa22.74■■□□□ 1.23
USP44-203ENST00000537435 EIF4G1Q04637 1599 aaKnown RBP22.67■■□□□ 1.22
USP44-203ENST00000537435 TOP2AP11388 1531 aaKnown RBP22.61■■□□□ 1.21
USP44-203ENST00000537435 SMARCA4P51532 1647 aa22.61■■□□□ 1.21
USP44-203ENST00000537435 UNC13AQ9UPW8 1703 aa22.55■■□□□ 1.2
USP44-203ENST00000537435 ZEB1P37275 1124 aaPredicted RBP22.52■■□□□ 1.2
USP44-203ENST00000537435 CCDC88BA6NC98 1476 aa22.52■■□□□ 1.2
USP44-203ENST00000537435 SMARCA2P51531 1590 aa22.48■■□□□ 1.19
USP44-203ENST00000537435 ABCC8Q09428 1581 aa22.45■■□□□ 1.18
USP44-203ENST00000537435 PABPN1Q86U42 306 aaKnown RBP eCLIP22.35■■□□□ 1.17
USP44-203ENST00000537435 BICRAQ9NZM4 1560 aa22.32■■□□□ 1.16
USP44-203ENST00000537435 SOGA1O94964 1423 aa22.26■■□□□ 1.15
USP44-203ENST00000537435 PEG3Q9GZU2 1588 aa22.19■■□□□ 1.14
USP44-203ENST00000537435 EEA1Q15075 1411 aa22.18■■□□□ 1.14
USP44-203ENST00000537435 CEP162Q5TB80 1403 aa22.18■■□□□ 1.14
USP44-203ENST00000537435 WRNQ14191 1432 aaPredicted RBP eCLIP22.17■■□□□ 1.14
USP44-203ENST00000537435 CSRNP3Q8WYN3 585 aa22.16■■□□□ 1.14
USP44-203ENST00000537435 TNIKQ9UKE5 1360 aa22.16■■□□□ 1.14
USP44-203ENST00000537435 RUSC2Q8N2Y8 1516 aa22.14■■□□□ 1.14
USP44-203ENST00000537435 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.07■■□□□ 1.12
USP44-203ENST00000537435 UBTFP17480 764 aaKnown RBP22.06■■□□□ 1.12
USP44-203ENST00000537435 ATAD2BQ9ULI0 1458 aa22.05■■□□□ 1.12
USP44-203ENST00000537435 CCER1Q8TC90 406 aaPredicted RBP22.02■■□□□ 1.12
USP44-203ENST00000537435 GOLGA3Q08378 1498 aa22.02■■□□□ 1.12
USP44-203ENST00000537435 TTBK1Q5TCY1 1321 aaPredicted RBP22.02■■□□□ 1.12
USP44-203ENST00000537435 BAZ1BQ9UIG0 1483 aaKnown RBP21.98■■□□□ 1.11
USP44-203ENST00000537435 SYNJ1O43426 1573 aa21.96■■□□□ 1.11
USP44-203ENST00000537435 CEP164Q9UPV0 1460 aa21.89■■□□□ 1.09
USP44-203ENST00000537435 KIF21BO75037 1637 aa21.85■■□□□ 1.09
USP44-203ENST00000537435 CLIP1P30622 1438 aa21.76■■□□□ 1.07
USP44-203ENST00000537435 RAPGEF2Q9Y4G8 1499 aa21.72■■□□□ 1.07
USP44-203ENST00000537435 TOP2BQ02880 1626 aa21.7■■□□□ 1.06
USP44-203ENST00000537435 VPS8Q8N3P4 1428 aa21.68■■□□□ 1.06
USP44-203ENST00000537435 BIVM-ERCC5R4GMW8 1640 aa21.62■■□□□ 1.05
USP44-203ENST00000537435 NCAPD3P42695 1498 aa21.61■■□□□ 1.05
USP44-203ENST00000537435 SCAF1Q9H7N4 1312 aaKnown RBP21.61■■□□□ 1.05
USP44-203ENST00000537435 HMGXB3Q12766 1538 aa21.6■■□□□ 1.05
USP44-203ENST00000537435 DIEXFQ68CQ4 756 aaKnown RBP21.6■■□□□ 1.05
USP44-203ENST00000537435 RANGAP1P46060 587 aaPredicted RBP21.59■■□□□ 1.05
USP44-203ENST00000537435 APLP2Q06481 763 aa21.58■■□□□ 1.05
USP44-203ENST00000537435 HNRNPUL2Q1KMD3 747 aaKnown RBP21.57■■□□□ 1.04
USP44-203ENST00000537435 PRXQ9BXM0 1461 aa21.52■■□□□ 1.04
USP44-203ENST00000537435 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
USP44-203ENST00000537435 CUX1P39880 1505 aa21.5■■□□□ 1.03
USP44-203ENST00000537435 ZNF316A6NFI3 1004 aaPredicted RBP21.45■■□□□ 1.02
USP44-203ENST00000537435 CFTRP13569 1480 aa21.45■■□□□ 1.02
USP44-203ENST00000537435 ACIN1Q9UKV3 1341 aaKnown RBP21.43■■□□□ 1.02
USP44-203ENST00000537435 KIF27Q86VH2 1401 aa21.42■■□□□ 1.02
USP44-203ENST00000537435 ARAP1Q96P48 1450 aa21.41■■□□□ 1.02
USP44-203ENST00000537435 NEUROD1Q13562 356 aa21.39■■□□□ 1.01
USP44-203ENST00000537435 CENPBP07199 599 aaPredicted RBP21.31■■□□□ 1
USP44-203ENST00000537435 KANK4Q5T7N3 995 aaPredicted RBP21.3■■□□□ 1
USP44-203ENST00000537435 ARHGAP35Q9NRY4 1499 aa21.22■□□□□ 0.99
USP44-203ENST00000537435 CADPSQ9ULU8 1353 aa21.21■□□□□ 0.99
USP44-203ENST00000537435 PRDM2Q13029 1718 aa21.21■□□□□ 0.99
USP44-203ENST00000537435 CUX2O14529 1486 aa21.21■□□□□ 0.99
USP44-203ENST00000537435 IGF1RP08069 1367 aa21.19■□□□□ 0.98
USP44-203ENST00000537435 RRBP1Q9P2E9 1410 aaKnown RBP21.18■□□□□ 0.98
USP44-203ENST00000537435 DHX57Q6P158 1386 aaKnown RBP21.17■□□□□ 0.98
USP44-203ENST00000537435 PELP1Q8IZL8 1130 aaKnown RBP21.17■□□□□ 0.98
USP44-203ENST00000537435 GTF3C3Q9Y5Q9 886 aa21.17■□□□□ 0.98
USP44-203ENST00000537435 CLSPNQ9HAW4 1339 aa21.17■□□□□ 0.98
USP44-203ENST00000537435 MIER1Q8N108 512 aa21.13■□□□□ 0.97
USP44-203ENST00000537435 FGD5Q6ZNL6 1462 aa21.12■□□□□ 0.97
USP44-203ENST00000537435 CARMIL1Q5VZK9 1371 aa21.1■□□□□ 0.97
USP44-203ENST00000537435 CCNB3Q8WWL7 1395 aa21.09■□□□□ 0.97
USP44-203ENST00000537435 YTHDC1Q96MU7 727 aaKnown RBP21.06■□□□□ 0.96
USP44-203ENST00000537435 CC2D2AQ9P2K1 1620 aa21.03■□□□□ 0.96
USP44-203ENST00000537435 FANCD2Q9BXW9 1451 aa21■□□□□ 0.95
USP44-203ENST00000537435 ITGAEP38570 1179 aa20.99■□□□□ 0.95
USP44-203ENST00000537435 TIAM1Q13009 1591 aa20.98■□□□□ 0.95
USP44-203ENST00000537435 MAP3K1Q13233 1512 aa20.98■□□□□ 0.95
USP44-203ENST00000537435 LRRC9Q6ZRR7 1453 aa20.92■□□□□ 0.94
USP44-203ENST00000537435 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
USP44-203ENST00000537435 RAD54L2Q9Y4B4 1467 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms