Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.643e-6■□□□□ 10.6
YBX3P16989 PPP5C-211ENST00000525507 1300 ntTSL 226.98■■□□□ 1.911e-6■□□□□ 10.6
YBX3P16989 PPP5C-213ENST00000527623 1215 ntTSL 226.74■■□□□ 1.871e-6■□□□□ 10.6
YBX3P16989 PPP5C-206ENST00000486994 2209 ntTSL 221.25■□□□□ 0.991e-6■□□□□ 10.6
YBX3P16989 PPP5C-208ENST00000491003 878 ntTSL 319.54■□□□□ 0.721e-6■□□□□ 10.6
YBX3P16989 PPP5C-207ENST00000487483 4675 ntTSL 515.43■□□□□ 0.061e-6■□□□□ 10.6
YBX3P16989 ABCF1-201ENST00000326195 3481 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.492e-8■□□□□ 10.6
YBX3P16989 ABCF1-202ENST00000376545 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.672e-8■□□□□ 10.6
YBX3P16989 ABCF1-205ENST00000475993 2860 ntTSL 1 (best)10.76□□□□□ -0.692e-8■□□□□ 10.6
YBX3P16989 GRB10-203ENST00000398810 4785 ntTSL 1 (best) BASIC9.91□□□□□ -0.824e-7■□□□□ 10.6
YBX3P16989 GRB10-204ENST00000398812 4705 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.864e-7■□□□□ 10.6
YBX3P16989 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC8.54□□□□□ -1.044e-7■□□□□ 10.6
YBX3P16989 CALCOCO2-201ENST00000258947 3682 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.873e-9■□□□□ 10.6
YBX3P16989 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC8.23□□□□□ -1.093e-9■□□□□ 10.6
YBX3P16989 COPB2-203ENST00000503326 433 ntTSL 35.88□□□□□ -1.479e-16■□□□□ 10.6
YBX3P16989 EIF3B-211ENST00000475415 3745 ntTSL 210.54□□□□□ -0.728e-14■□□□□ 10.6
YBX3P16989 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.791e-8■□□□□ 10.6
YBX3P16989 MZT2A-204ENST00000445782 980 ntTSL 236■■■■□ 3.353e-7■□□□□ 10.6
YBX3P16989 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.873e-7■□□□□ 10.6
YBX3P16989 MZT2A-203ENST00000427024 679 ntTSL 323.92■■□□□ 1.423e-7■□□□□ 10.6
YBX3P16989 MZT2A-202ENST00000410036 382 ntTSL 521.73■■□□□ 1.073e-7■□□□□ 10.6
YBX3P16989 HK2-202ENST00000409174 5278 ntTSL 1 (best) BASIC11.32□□□□□ -0.62e-8■□□□□ 10.6
YBX3P16989 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.191e-6■□□□□ 10.6
YBX3P16989 TMEM69-201ENST00000372025 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.54e-10■□□□□ 10.6
YBX3P16989 TMEM69-202ENST00000496366 722 ntTSL 26.85□□□□□ -1.314e-10■□□□□ 10.6
YBX3P16989 RASSF5-208ENST00000605653 575 ntTSL 517.51■□□□□ 0.397e-7■□□□□ 10.6
YBX3P16989 FANCI-210ENST00000565522 233 ntTSL 56.17□□□□□ -1.422e-6■□□□□ 10.6
YBX3P16989 FANCI-203ENST00000447611 3690 ntTSL 24.42□□□□□ -1.72e-6■□□□□ 10.6
YBX3P16989 FANCI-204ENST00000561894 3268 ntTSL 24.16□□□□□ -1.742e-6■□□□□ 10.6
YBX3P16989 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.051e-9■□□□□ 10.6
YBX3P16989 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC23.15■■□□□ 1.34e-10■□□□□ 10.6
YBX3P16989 MFGE8-214ENST00000560937 801 ntTSL 222.46■■□□□ 1.194e-10■□□□□ 10.6
YBX3P16989 MFGE8-206ENST00000558029 849 ntTSL 322.36■■□□□ 1.174e-10■□□□□ 10.6
YBX3P16989 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.04■□□□□ 0.84e-10■□□□□ 10.6
YBX3P16989 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.724e-10■□□□□ 10.6
YBX3P16989 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.594e-10■□□□□ 10.6
YBX3P16989 MFGE8-205ENST00000558018 1989 ntTSL 218.56■□□□□ 0.564e-10■□□□□ 10.6
YBX3P16989 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.261e-323■□□□□ 10.6
YBX3P16989 SLC25A39-208ENST00000586633 566 ntTSL 324.31■■□□□ 1.484e-13■□□□□ 10.6
YBX3P16989 RPS8-205ENST00000474582 391 ntTSL 1 (best)15.72■□□□□ 0.116e-10■□□□□ 10.6
YBX3P16989 RPL27-208ENST00000593262 1872 ntTSL 219.56■□□□□ 0.721e-20■□□□□ 10.6
YBX3P16989 RPL27-201ENST00000253788 490 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.321e-20■□□□□ 10.6
YBX3P16989 RPL27-204ENST00000588830 318 ntTSL 210.22□□□□□ -0.771e-20■□□□□ 10.6
YBX3P16989 RPL27-205ENST00000589037 585 ntAPPRIS P1 TSL 3 BASIC9.43□□□□□ -0.91e-20■□□□□ 10.6
YBX3P16989 RACK1-229ENST00000513027 697 ntTSL 314□□□□□ -0.179e-61■□□□□ 10.6
YBX3P16989 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.748e-23■□□□□ 10.6
YBX3P16989 NACA-209ENST00000548084 542 ntTSL 316.24■□□□□ 0.193e-47■□□□□ 10.6
YBX3P16989 NACA-219ENST00000551793 768 ntTSL 28.77□□□□□ -1.013e-47■□□□□ 10.6
YBX3P16989 NACA-217ENST00000551520 544 ntTSL 28.48□□□□□ -1.053e-47■□□□□ 10.6
YBX3P16989 NACA-214ENST00000550343 343 ntTSL 23.45□□□□□ -1.863e-47■□□□□ 10.6
YBX3P16989 GPI-217ENST00000592277 615 ntTSL 422.11■■□□□ 1.133e-31■□□□□ 10.6
YBX3P16989 MDH1-202ENST00000409476 808 ntTSL 5 BASIC13.78□□□□□ -0.21e-9■□□□□ 10.6
YBX3P16989 MDH1-203ENST00000409908 700 ntTSL 3 BASIC13.78□□□□□ -0.21e-9■□□□□ 10.6
YBX3P16989 HBG2-202ENST00000380252 694 ntTSL 3 BASIC13.73□□□□□ -0.212e-11■□□□□ 10.6
YBX3P16989 HBG2-203ENST00000380259 1772 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.232e-11■□□□□ 10.6
YBX3P16989 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.84■□□□□ 0.292e-14■□□□□ 10.6
YBX3P16989 NAA10-216ENST00000488481 569 ntTSL 223.68■■□□□ 1.383e-15■□□□□ 10.6
YBX3P16989 PRMT1-216ENST00000530361 866 ntTSL 323.59■■□□□ 1.376e-12■□□□□ 10.6
YBX3P16989 PRMT1-210ENST00000528126 642 ntTSL 221.29■■□□□ 16e-12■□□□□ 10.6
YBX3P16989 HDDC2-201ENST00000318787 1350 ntTSL 1 (best)21.15■□□□□ 0.982e-9■□□□□ 10.6
YBX3P16989 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC19.07■□□□□ 0.642e-9■□□□□ 10.6
YBX3P16989 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.532e-9■□□□□ 10.6
YBX3P16989 HDDC2-209ENST00000609477 564 ntTSL 418.38■□□□□ 0.532e-9■□□□□ 10.6
YBX3P16989 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.19e-7■□□□□ 10.6
YBX3P16989 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.019e-7■□□□□ 10.6
YBX3P16989 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC13.15□□□□□ -0.39e-7■□□□□ 10.6
YBX3P16989 NUCB1-203ENST00000411700 673 ntTSL 426.45■■□□□ 1.828e-10■□□□□ 10.6
YBX3P16989 NUCB1-204ENST00000424608 884 ntAPPRIS ALT2 TSL 525.91■■□□□ 1.748e-10■□□□□ 10.6
YBX3P16989 NUCB1-206ENST00000451312 563 ntTSL 225.42■■□□□ 1.668e-10■□□□□ 10.6
YBX3P16989 NUCB1-207ENST00000452087 864 ntTSL 324.71■■□□□ 1.558e-10■□□□□ 10.6
YBX3P16989 NUCB1-205ENST00000443560 551 ntTSL 420.99■□□□□ 0.958e-10■□□□□ 10.6
YBX3P16989 NUCB1-211ENST00000485798 938 ntTSL 319.63■□□□□ 0.738e-10■□□□□ 10.6
YBX3P16989 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.263e-12■□□□□ 10.6
YBX3P16989 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC24.57■■□□□ 1.523e-12■□□□□ 10.6
YBX3P16989 NDUFS8-212ENST00000531228 531 ntTSL 219.64■□□□□ 0.733e-14■□□□□ 10.6
YBX3P16989 NDUFS8-206ENST00000525628 515 ntTSL 219.05■□□□□ 0.643e-14■□□□□ 10.6
YBX3P16989 ENO1-205ENST00000492343 826 ntTSL 1 (best)10.56□□□□□ -0.723e-74■□□□□ 10.5
YBX3P16989 ENO1-203ENST00000486051 536 ntTSL 39.02□□□□□ -0.973e-74■□□□□ 10.5
YBX3P16989 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.97■□□□□ 0.631e-323■□□□□ 10.5
YBX3P16989 MARCH6-208ENST00000510792 1963 ntTSL 2 BASIC11.33□□□□□ -0.64e-11■□□□□ 10.5
YBX3P16989 DDB1-205ENST00000535174 896 ntTSL 322.65■■□□□ 1.223e-12■□□□□ 10.5
YBX3P16989 DDB1-215ENST00000539712 1020 ntTSL 222.5■■□□□ 1.193e-12■□□□□ 10.5
YBX3P16989 DDB1-225ENST00000545930 1278 ntTSL 211.7□□□□□ -0.543e-12■□□□□ 10.5
YBX3P16989 MAP4-206ENST00000423088 899 ntTSL 313.67□□□□□ -0.224e-12■□□□□ 10.5
YBX3P16989 ZCCHC7-206ENST00000488607 884 ntTSL 27.77□□□□□ -1.173e-8■□□□□ 10.5
YBX3P16989 ZCCHC7-204ENST00000463625 732 ntTSL 27.38□□□□□ -1.233e-8■□□□□ 10.5
YBX3P16989 HAUS4-209ENST00000554063 660 ntTSL 313.49□□□□□ -0.251e-6■□□□□ 10.5
YBX3P16989 HAUS4-219ENST00000556421 851 ntTSL 27.68□□□□□ -1.181e-6■□□□□ 10.5
YBX3P16989 MAPKAP1-214ENST00000448439 722 ntTSL 517.85■□□□□ 0.459e-7■□□□□ 10.5
YBX3P16989 RHEB-203ENST00000470370 501 ntTSL 57.32□□□□□ -1.241e-8■□□□□ 10.5
YBX3P16989 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC30.17■■■□□ 2.423e-13■□□□□ 10.5
YBX3P16989 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.62■■■□□ 2.013e-13■□□□□ 10.5
YBX3P16989 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC25.89■■□□□ 1.743e-13■□□□□ 10.5
YBX3P16989 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.53e-13■□□□□ 10.5
YBX3P16989 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC21.42■■□□□ 1.023e-13■□□□□ 10.5
YBX3P16989 SLC25A39-213ENST00000591006 2217 ntTSL 214.3□□□□□ -0.123e-13■□□□□ 10.5
YBX3P16989 SNRNP200-206ENST00000484372 581 ntTSL 216.05■□□□□ 0.162e-11■□□□□ 10.5
YBX3P16989 BAZ2A-203ENST00000547453 484 ntTSL 414.03□□□□□ -0.169e-7■□□□□ 10.5
YBX3P16989 BAZ2A-210ENST00000549787 2773 ntTSL 1 (best)13.64□□□□□ -0.234e-7■□□□□ 10.5
YBX3P16989 BAZ2A-217ENST00000553222 681 ntTSL 211.24□□□□□ -0.612e-6■□□□□ 10.5
Retrieved 100 of 29,075 protein–RNA pairs in 163.1 ms