Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.69■□□□□ 0.1
PKNOX1P55347 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 CICP13-201ENST00000422015 2789 ntBASIC15.69■□□□□ 0.1
PKNOX1P55347 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.68■□□□□ 0.1
PKNOX1P55347 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.68■□□□□ 0.1
PKNOX1P55347 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.68■□□□□ 0.1
PKNOX1P55347 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PKNOX1P55347 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PKNOX1P55347 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.68■□□□□ 0.1
PKNOX1P55347 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.68■□□□□ 0.1
PKNOX1P55347 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.68■□□□□ 0.1
PKNOX1P55347 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.68■□□□□ 0.1
PKNOX1P55347 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.68■□□□□ 0.1
PKNOX1P55347 GPX1P2-201ENST00000429271 606 ntBASIC15.68■□□□□ 0.1
PKNOX1P55347 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.68■□□□□ 0.1
PKNOX1P55347 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.68■□□□□ 0.1
PKNOX1P55347 AC009078.2-202ENST00000463353 338 ntBASIC15.68■□□□□ 0.1
PKNOX1P55347 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.68■□□□□ 0.1
PKNOX1P55347 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.68■□□□□ 0.1
PKNOX1P55347 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.68■□□□□ 0.1
PKNOX1P55347 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.68■□□□□ 0.1
PKNOX1P55347 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.68■□□□□ 0.1
PKNOX1P55347 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PKNOX1P55347 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.67■□□□□ 0.1
PKNOX1P55347 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PKNOX1P55347 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PKNOX1P55347 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
PKNOX1P55347 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PKNOX1P55347 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.67■□□□□ 0.1
PKNOX1P55347 AC074386.1-202ENST00000463561 864 ntBASIC15.67■□□□□ 0.1
PKNOX1P55347 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.67■□□□□ 0.1
PKNOX1P55347 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 PDPK2P-202ENST00000562415 1191 ntBASIC15.67■□□□□ 0.1
PKNOX1P55347 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.67■□□□□ 0.1
PKNOX1P55347 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PKNOX1P55347 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms