Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC7.42□□□□□ -1.226e-6■□□□□ 10.6
YBX3P16989 NF1-210ENST00000479614 1114 ntTSL 57.37□□□□□ -1.236e-6■□□□□ 10.6
YBX3P16989 NF1-215ENST00000493220 5691 ntTSL 26.91□□□□□ -1.36e-6■□□□□ 10.6
YBX3P16989 NF1-206ENST00000466819 1177 ntTSL 56.39□□□□□ -1.396e-6■□□□□ 10.6
YBX3P16989 PABPC4-211ENST00000474378 591 ntTSL 56.03□□□□□ -1.445e-14■□□□□ 10.6
YBX3P16989 POLR2B-207ENST00000464918 444 ntTSL 25.91□□□□□ -1.466e-6■□□□□ 10.6
YBX3P16989 TMEM237-207ENST00000466641 720 ntTSL 1 (best)5.77□□□□□ -1.496e-6■□□□□ 10.6
YBX3P16989 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.84■□□□□ 0.452e-6■□□□□ 10.6
YBX3P16989 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.262e-6■□□□□ 10.6
YBX3P16989 CRKL-202ENST00000411769 2037 ntTSL 1 (best)22.47■■□□□ 1.197e-17■□□□□ 10.6
YBX3P16989 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.517e-17■□□□□ 10.6
YBX3P16989 TMEM63B-203ENST00000371893 2921 ntTSL 1 (best)16.83■□□□□ 0.287e-7■□□□□ 10.6
YBX3P16989 TMEM63B-209ENST00000533121 2465 ntTSL 1 (best)15.83■□□□□ 0.127e-7■□□□□ 10.6
YBX3P16989 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.087e-7■□□□□ 10.6
YBX3P16989 TMEM63B-201ENST00000259746 3318 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.47e-7■□□□□ 10.6
YBX3P16989 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.752e-6■□□□□ 10.6
YBX3P16989 ARPC3-203ENST00000467622 1098 ntTSL 512.21□□□□□ -0.451e-7■□□□□ 10.6
YBX3P16989 ARPC3-206ENST00000476566 362 ntTSL 27.98□□□□□ -1.131e-7■□□□□ 10.6
YBX3P16989 SMARCC1-208ENST00000492896 568 ntTSL 410.29□□□□□ -0.762e-9■□□□□ 10.6
YBX3P16989 GNL2-206ENST00000488496 539 ntTSL 220.04■□□□□ 0.84e-10■□□□□ 10.6
YBX3P16989 AP3S1-204ENST00000506430 718 ntTSL 523.26■■□□□ 1.319e-7■□□□□ 10.6
YBX3P16989 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.059e-7■□□□□ 10.6
YBX3P16989 HUWE1-204ENST00000426907 4805 ntTSL 59.29□□□□□ -0.925e-7■□□□□ 10.6
YBX3P16989 EIF3D-206ENST00000455547 996 ntTSL 513.36□□□□□ -0.271e-13■□□□□ 10.6
YBX3P16989 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.312e-6■□□□□ 10.6
YBX3P16989 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.391e-7■□□□□ 10.6
YBX3P16989 OAZ1-205ENST00000589361 679 ntTSL 1 (best)20.61■□□□□ 0.893e-29■□□□□ 10.6
YBX3P16989 ACSS2-210ENST00000476922 1527 ntTSL 224.58■■□□□ 1.537e-7■□□□□ 10.6
YBX3P16989 ACSS2-211ENST00000477932 2450 ntTSL 520.38■□□□□ 0.857e-7■□□□□ 10.6
YBX3P16989 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.41■□□□□ 0.77e-7■□□□□ 10.6
YBX3P16989 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.227e-7■□□□□ 10.6
YBX3P16989 ACSS2-214ENST00000481284 2851 ntTSL 210.78□□□□□ -0.687e-7■□□□□ 10.6
YBX3P16989 TNIP1-209ENST00000521001 575 ntTSL 412.88□□□□□ -0.352e-9■□□□□ 10.6
YBX3P16989 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.171e-6■□□□□ 10.6
YBX3P16989 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.041e-6■□□□□ 10.6
YBX3P16989 NET1-201ENST00000355029 3402 ntTSL 1 (best) BASIC12.2□□□□□ -0.469e-10■□□□□ 10.6
YBX3P16989 NET1-202ENST00000380359 3253 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.659e-10■□□□□ 10.6
YBX3P16989 FURIN-208ENST00000640725 224 ntTSL 5 BASIC16.15■□□□□ 0.181e-7■□□□□ 10.6
YBX3P16989 CCNI-205ENST00000507788 595 ntTSL 421.6■■□□□ 1.052e-16■□□□□ 10.6
YBX3P16989 CCNI-209ENST00000515790 390 ntTSL 214.39□□□□□ -0.112e-16■□□□□ 10.6
YBX3P16989 MYL6B-205ENST00000549380 221 ntTSL 210.58□□□□□ -0.724e-7■□□□□ 10.6
YBX3P16989 BNIP3L-203ENST00000520077 922 ntTSL 1 (best)15.38■□□□□ 0.053e-9■□□□□ 10.6
YBX3P16989 BNIP3L-207ENST00000523949 875 ntTSL 313.42□□□□□ -0.263e-9■□□□□ 10.6
YBX3P16989 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.283e-9■□□□□ 10.6
YBX3P16989 FAM78A-204ENST00000464831 792 ntTSL 219.67■□□□□ 0.743e-8■□□□□ 10.6
YBX3P16989 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.223e-8■□□□□ 10.6
YBX3P16989 FAM78A-202ENST00000372269 3659 ntTSL 1 (best) BASIC12.07□□□□□ -0.483e-8■□□□□ 10.6
YBX3P16989 FAM78A-201ENST00000247295 4560 ntTSL 211.6□□□□□ -0.553e-8■□□□□ 10.6
YBX3P16989 KEAP1-209ENST00000592055 979 ntTSL 325.06■■□□□ 1.66e-8■□□□□ 10.6
YBX3P16989 KEAP1-203ENST00000585845 774 ntTSL 523.86■■□□□ 1.416e-8■□□□□ 10.6
YBX3P16989 PHF6-204ENST00000370803 4489 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.851e-6■□□□□ 10.6
YBX3P16989 PHF6-203ENST00000370800 1150 ntTSL 1 (best) BASIC9.51□□□□□ -0.891e-6■□□□□ 10.6
YBX3P16989 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC8.45□□□□□ -1.061e-6■□□□□ 10.6
YBX3P16989 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.741e-6■□□□□ 10.6
YBX3P16989 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.781e-6■□□□□ 10.6
YBX3P16989 PIGT-205ENST00000432270 832 ntTSL 318.91■□□□□ 0.623e-9■□□□□ 10.6
YBX3P16989 PIGT-244ENST00000639382 1193 ntTSL 1 (best)18.02■□□□□ 0.483e-9■□□□□ 10.6
YBX3P16989 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.425e-7■□□□□ 10.6
YBX3P16989 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.375e-7■□□□□ 10.6
YBX3P16989 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.225e-7■□□□□ 10.6
YBX3P16989 INSIG1-204ENST00000425172 596 ntTSL 231.55■■■□□ 2.641e-22■□□□□ 10.6
YBX3P16989 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.278e-8■□□□□ 10.6
YBX3P16989 USP48-214ENST00000532737 680 ntTSL 431.8■■■□□ 2.681e-13■□□□□ 10.6
YBX3P16989 USP48-212ENST00000527823 554 ntTSL 411.72□□□□□ -0.531e-13■□□□□ 10.6
YBX3P16989 RPS21-203ENST00000370592 401 ntTSL 215.95■□□□□ 0.143e-66■□□□□ 10.6
YBX3P16989 ARPC3-208ENST00000548878 532 ntTSL 58.14□□□□□ -1.119e-10■□□□□ 10.6
YBX3P16989 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.052e-7■□□□□ 10.6
YBX3P16989 UBA1-203ENST00000377351 3466 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.842e-7■□□□□ 10.6
YBX3P16989 INTS10-210ENST00000521357 876 ntTSL 521.87■■□□□ 1.095e-6■□□□□ 10.6
YBX3P16989 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.625e-6■□□□□ 10.6
YBX3P16989 INTS10-204ENST00000518799 457 ntTSL 59.91□□□□□ -0.825e-6■□□□□ 10.6
YBX3P16989 INTS10-205ENST00000519493 629 ntTSL 59.74□□□□□ -0.855e-6■□□□□ 10.6
YBX3P16989 TKT-214ENST00000494523 1955 ntTSL 215.45■□□□□ 0.062e-16■□□□□ 10.6
YBX3P16989 ZPR1-205ENST00000431973 508 ntTSL 512.13□□□□□ -0.479e-7■□□□□ 10.6
YBX3P16989 ATP1A1-202ENST00000369494 698 ntTSL 311.57□□□□□ -0.562e-9■□□□□ 10.6
YBX3P16989 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC17.71■□□□□ 0.435e-8■□□□□ 10.6
YBX3P16989 NSD2-220ENST00000509115 1212 ntTSL 216■□□□□ 0.155e-8■□□□□ 10.6
YBX3P16989 NSD2-222ENST00000512700 1095 ntTSL 516■□□□□ 0.155e-8■□□□□ 10.6
YBX3P16989 NSD2-218ENST00000508355 2092 ntTSL 1 (best)15.67■□□□□ 0.15e-8■□□□□ 10.6
YBX3P16989 NSD2-212ENST00000503128 8568 ntTSL 1 (best) BASIC10.45□□□□□ -0.745e-8■□□□□ 10.6
YBX3P16989 NSD2-207ENST00000398261 8390 ntTSL 1 (best) BASIC9.2□□□□□ -0.945e-8■□□□□ 10.6
YBX3P16989 NSD2-219ENST00000508803 4251 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.985e-8■□□□□ 10.6
YBX3P16989 NSD2-224ENST00000514045 3964 ntTSL 1 (best) BASIC8.37□□□□□ -1.075e-8■□□□□ 10.6
YBX3P16989 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC8.3□□□□□ -1.085e-8■□□□□ 10.6
YBX3P16989 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.51e-323■□□□□ 10.6
YBX3P16989 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.152e-6■□□□□ 10.6
YBX3P16989 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.252e-6■□□□□ 10.6
YBX3P16989 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.352e-6■□□□□ 10.6
YBX3P16989 SPG11-201ENST00000261866 7774 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.412e-6■□□□□ 10.6
YBX3P16989 PSMF1-209ENST00000479715 660 ntTSL 317.79■□□□□ 0.442e-8■□□□□ 10.6
YBX3P16989 PSMF1-208ENST00000478004 632 ntTSL 215.14■□□□□ 0.012e-8■□□□□ 10.6
YBX3P16989 PSMF1-205ENST00000381899 704 ntTSL 215.08■□□□□ 02e-8■□□□□ 10.6
YBX3P16989 GNAS-220ENST00000461152 278 ntTSL 524.79■■□□□ 1.561e-6■□□□□ 10.6
YBX3P16989 ASNS-204ENST00000414884 584 ntTSL 226.03■■□□□ 1.761e-11■□□□□ 10.6
YBX3P16989 ASNS-211ENST00000451771 562 ntTSL 225.95■■□□□ 1.741e-11■□□□□ 10.6
YBX3P16989 ASNS-208ENST00000442734 828 ntTSL 219.87■□□□□ 0.771e-11■□□□□ 10.6
YBX3P16989 ASNS-212ENST00000453600 573 ntTSL 319.32■□□□□ 0.681e-11■□□□□ 10.6
YBX3P16989 ASNS-207ENST00000437657 745 ntTSL 510.85□□□□□ -0.671e-11■□□□□ 10.6
YBX3P16989 ASNS-210ENST00000448127 579 ntTSL 210.03□□□□□ -0.81e-11■□□□□ 10.6
YBX3P16989 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.04■■■□□ 2.723e-6■□□□□ 10.6
Retrieved 100 of 29,075 protein–RNA pairs in 179.2 ms