RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 DCAF8L2P0C7V8 631 aa23.79■■□□□ 1.4
SPG11-202ENST00000427534 EHMT2Q96KQ7 1210 aa22.31■■□□□ 1.16
SPG11-202ENST00000427534 SUPT5HO00267 1087 aaKnown RBP22.04■■□□□ 1.12
SPG11-202ENST00000427534 SHROOM4Q9ULL8 1493 aa21.78■■□□□ 1.08
SPG11-202ENST00000427534 NISCHQ9Y2I1 1504 aa21.71■■□□□ 1.07
SPG11-202ENST00000427534 TTBK1Q5TCY1 1321 aaPredicted RBP21.4■■□□□ 1.02
SPG11-202ENST00000427534 RANGAP1P46060 587 aaPredicted RBP21.18■□□□□ 0.98
SPG11-202ENST00000427534 FAM9AQ8IZU1 332 aaPredicted RBP21.08■□□□□ 0.97
SPG11-202ENST00000427534 APLP2Q06481 763 aa20.83■□□□□ 0.93
SPG11-202ENST00000427534 ATP1B4Q9UN42 357 aaPredicted RBP20.83■□□□□ 0.93
SPG11-202ENST00000427534 PCGF6Q9BYE7 350 aa20.51■□□□□ 0.87
SPG11-202ENST00000427534 PELP1Q8IZL8 1130 aaKnown RBP20.35■□□□□ 0.85
SPG11-202ENST00000427534 PPARGC1BQ86YN6 1023 aaKnown RBP20.3■□□□□ 0.84
SPG11-202ENST00000427534 CHIC1Q5VXU3 224 aa20.26■□□□□ 0.83
SPG11-202ENST00000427534 MYT1LQ9UL68 1186 aa20.16■□□□□ 0.82
SPG11-202ENST00000427534 UBTFP17480 764 aaKnown RBP20.11■□□□□ 0.81
SPG11-202ENST00000427534 YTHDC1Q96MU7 727 aaKnown RBP20.09■□□□□ 0.81
SPG11-202ENST00000427534 CNGB1Q14028 1251 aaPredicted RBP20.08■□□□□ 0.81
SPG11-202ENST00000427534 ERICH6Q7L0X2 663 aa20.07■□□□□ 0.8
SPG11-202ENST00000427534 CCER1Q8TC90 406 aaPredicted RBP20.06■□□□□ 0.8
SPG11-202ENST00000427534 TRIM41Q8WV44 630 aa20.05■□□□□ 0.8
SPG11-202ENST00000427534 POLR3GLQ9BT43 218 aa19.98■□□□□ 0.79
SPG11-202ENST00000427534 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.95■□□□□ 0.78
SPG11-202ENST00000427534 HNRNPUL2Q1KMD3 747 aaKnown RBP19.95■□□□□ 0.78
SPG11-202ENST00000427534 ITGAEP38570 1179 aa19.92■□□□□ 0.78
SPG11-202ENST00000427534 SLC4A1APQ9BWU0 796 aaKnown RBP19.72■□□□□ 0.75
SPG11-202ENST00000427534 MYT1Q01538 1121 aa19.6■□□□□ 0.73
SPG11-202ENST00000427534 CENPBP07199 599 aaPredicted RBP19.59■□□□□ 0.73
SPG11-202ENST00000427534 ZEB1P37275 1124 aaPredicted RBP19.56■□□□□ 0.72
SPG11-202ENST00000427534 NEFLP07196 543 aa19.53■□□□□ 0.72
SPG11-202ENST00000427534 LOC105371045A0A1W2PR82 267 aa19.31■□□□□ 0.68
SPG11-202ENST00000427534 BCL11AQ9H165 835 aa19.3■□□□□ 0.68
SPG11-202ENST00000427534 PLPPR3Q6T4P5 718 aa19.25■□□□□ 0.67
SPG11-202ENST00000427534 PABPN1Q86U42 306 aaKnown RBP eCLIP19.24■□□□□ 0.67
SPG11-202ENST00000427534 DAXXQ9UER7 740 aaPredicted RBP19.21■□□□□ 0.67
SPG11-202ENST00000427534 FBLN2P98095 1184 aa19.2■□□□□ 0.66
SPG11-202ENST00000427534 SLC24A1O60721 1099 aa19.19■□□□□ 0.66
SPG11-202ENST00000427534 ARID3CA6NKF2 412 aa19.16■□□□□ 0.66
SPG11-202ENST00000427534 FAM50AQ14320 339 aaKnown RBP19.12■□□□□ 0.65
SPG11-202ENST00000427534 TRIM26Q12899 539 aaPredicted RBP19.12■□□□□ 0.65
SPG11-202ENST00000427534 ZNF326Q5BKZ1 582 aaKnown RBP19.08■□□□□ 0.64
SPG11-202ENST00000427534 TRIM52Q96A61 297 aa19.06■□□□□ 0.64
SPG11-202ENST00000427534 BCANQ96GW7 911 aa19.06■□□□□ 0.64
SPG11-202ENST00000427534 NEUROD1Q13562 356 aa19.03■□□□□ 0.64
SPG11-202ENST00000427534 CLSPNQ9HAW4 1339 aa19.01■□□□□ 0.63
SPG11-202ENST00000427534 HRCP23327 699 aa18.89■□□□□ 0.61
SPG11-202ENST00000427534 ABCC9O60706 1549 aa18.88■□□□□ 0.61
SPG11-202ENST00000427534 P3H3Q8IVL6 736 aa18.85■□□□□ 0.61
SPG11-202ENST00000427534 ZNF316A6NFI3 1004 aaPredicted RBP18.8■□□□□ 0.6
SPG11-202ENST00000427534 SENP3Q9H4L4 574 aaPredicted RBP18.79■□□□□ 0.6
SPG11-202ENST00000427534 PLEKHG5O94827 1062 aa18.71■□□□□ 0.59
SPG11-202ENST00000427534 ZNF777Q9ULD5 760 aaPredicted RBP18.7■□□□□ 0.58
SPG11-202ENST00000427534 CHGAP10645 457 aaKnown RBP18.58■□□□□ 0.56
SPG11-202ENST00000427534 CANXP27824 592 aaKnown RBP18.55■□□□□ 0.56
SPG11-202ENST00000427534 DIEXFQ68CQ4 756 aaKnown RBP18.54■□□□□ 0.56
SPG11-202ENST00000427534 SCAF1Q9H7N4 1312 aaKnown RBP18.54■□□□□ 0.56
SPG11-202ENST00000427534 A0A0G2JS52 829 aa18.53■□□□□ 0.56
SPG11-202ENST00000427534 ZBTB47Q9UFB7 747 aaPredicted RBP18.53■□□□□ 0.56
SPG11-202ENST00000427534 RTL5Q5HYW3 569 aaPredicted RBP18.47■□□□□ 0.55
SPG11-202ENST00000427534 ESF1Q9H501 851 aaKnown RBP18.45■□□□□ 0.54
SPG11-202ENST00000427534 STAG3Q9UJ98 1225 aa18.45■□□□□ 0.54
SPG11-202ENST00000427534 ZBTB7CA1YPR0 619 aa18.39■□□□□ 0.53
SPG11-202ENST00000427534 SALL2Q9Y467 1007 aaPredicted RBP18.38■□□□□ 0.53
SPG11-202ENST00000427534 ANP32CO43423 234 aa18.34■□□□□ 0.53
SPG11-202ENST00000427534 NPM2Q86SE8 214 aaKnown RBP18.34■□□□□ 0.53
SPG11-202ENST00000427534 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.33■□□□□ 0.522e-6■■■□□ 18.5
SPG11-202ENST00000427534 NEFMP07197 916 aa18.32■□□□□ 0.52
SPG11-202ENST00000427534 CHIC2Q9UKJ5 165 aa18.2■□□□□ 0.5
SPG11-202ENST00000427534 GTF3C3Q9Y5Q9 886 aa18.18■□□□□ 0.5
SPG11-202ENST00000427534 SENP3-EIF4A1A0A087X0R7 540 aa18.17■□□□□ 0.5
SPG11-202ENST00000427534 C14orf37Q86TY3 774 aa18.16■□□□□ 0.5
SPG11-202ENST00000427534 CSRNP3Q8WYN3 585 aa18.14■□□□□ 0.5
SPG11-202ENST00000427534 NPM1P06748 294 aaKnown RBP eCLIP18.13■□□□□ 0.49
SPG11-202ENST00000427534 CDK11AQ9UQ88 783 aaPredicted RBP18.13■□□□□ 0.49
SPG11-202ENST00000427534 KDM2AQ9Y2K7 1162 aa18.12■□□□□ 0.49
SPG11-202ENST00000427534 ARXQ96QS3 562 aa18.1■□□□□ 0.49
SPG11-202ENST00000427534 FAM9BQ8IZU0 186 aa18.07■□□□□ 0.48
SPG11-202ENST00000427534 HIRIP3Q9BW71 556 aaPredicted RBP18.04■□□□□ 0.48
SPG11-202ENST00000427534 KCNH8Q96L42 1107 aa18.02■□□□□ 0.48
SPG11-202ENST00000427534 TULP1O00294 542 aaPredicted RBP17.99■□□□□ 0.47
SPG11-202ENST00000427534 ZCCHC6Q5VYS8 1495 aaKnown RBP17.98■□□□□ 0.47
SPG11-202ENST00000427534 SCRIBQ14160 1630 aa17.98■□□□□ 0.47
SPG11-202ENST00000427534 HSP90AA1P07900 732 aaKnown RBP17.97■□□□□ 0.47
SPG11-202ENST00000427534 ARID4BQ4LE39 1312 aaPredicted RBP17.96■□□□□ 0.47
SPG11-202ENST00000427534 TAOK2Q9UL54 1235 aa17.91■□□□□ 0.46
SPG11-202ENST00000427534 HAP1P54257 671 aaPredicted RBP17.91■□□□□ 0.46
SPG11-202ENST00000427534 DDX10Q13206 875 aaKnown RBP17.91■□□□□ 0.46
SPG11-202ENST00000427534 IRX6P78412 446 aaPredicted RBP17.9■□□□□ 0.46
SPG11-202ENST00000427534 TPRNQ4KMQ1 711 aa17.9■□□□□ 0.46
SPG11-202ENST00000427534 FKBP8Q14318 412 aa17.87■□□□□ 0.45
SPG11-202ENST00000427534 HNRNPUQ00839 825 aaKnown RBP eCLIP17.86■□□□□ 0.45
SPG11-202ENST00000427534 LMOD2Q6P5Q4 547 aa17.84■□□□□ 0.45
SPG11-202ENST00000427534 PPP1R15AO75807 674 aaPredicted RBP17.84■□□□□ 0.45
SPG11-202ENST00000427534 CHMP7Q8WUX9 453 aaPredicted RBP17.84■□□□□ 0.45
SPG11-202ENST00000427534 ANP32AP39687 249 aaKnown RBP17.82■□□□□ 0.44
SPG11-202ENST00000427534 TONSLQ96HA7 1378 aa17.82■□□□□ 0.44
SPG11-202ENST00000427534 PPM1GO15355 546 aaPredicted RBP17.81■□□□□ 0.44
SPG11-202ENST00000427534 TMC1Q8TDI8 760 aa17.8■□□□□ 0.44
SPG11-202ENST00000427534 RGL3Q3MIN7 710 aa17.79■□□□□ 0.44
SPG11-202ENST00000427534 TRHP20396 242 aaPredicted RBP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms