RNA–Protein interactions for RNA: ENST00000261866.11

SPG11-201, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SPG11, Length 7,774 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-201ENST00000261866 DCAF8L2P0C7V8 631 aa21.94■■□□□ 1.1
SPG11-201ENST00000261866 SUPT5HO00267 1087 aaKnown RBP20.44■□□□□ 0.86
SPG11-201ENST00000261866 EHMT2Q96KQ7 1210 aa20.37■□□□□ 0.85
SPG11-201ENST00000261866 SHROOM4Q9ULL8 1493 aa20.23■□□□□ 0.83
SPG11-201ENST00000261866 NISCHQ9Y2I1 1504 aa19.79■□□□□ 0.76
SPG11-201ENST00000261866 TTBK1Q5TCY1 1321 aaPredicted RBP19.56■□□□□ 0.72
SPG11-201ENST00000261866 FAM9AQ8IZU1 332 aaPredicted RBP19.45■□□□□ 0.7
SPG11-201ENST00000261866 RANGAP1P46060 587 aaPredicted RBP19.41■□□□□ 0.7
SPG11-201ENST00000261866 APLP2Q06481 763 aa19.27■□□□□ 0.68
SPG11-201ENST00000261866 ATP1B4Q9UN42 357 aaPredicted RBP19.11■□□□□ 0.65
SPG11-201ENST00000261866 PCGF6Q9BYE7 350 aa18.89■□□□□ 0.61
SPG11-201ENST00000261866 PELP1Q8IZL8 1130 aaKnown RBP18.84■□□□□ 0.61
SPG11-201ENST00000261866 TRIM41Q8WV44 630 aa18.71■□□□□ 0.59
SPG11-201ENST00000261866 PPARGC1BQ86YN6 1023 aaKnown RBP18.66■□□□□ 0.58
SPG11-201ENST00000261866 UBTFP17480 764 aaKnown RBP18.66■□□□□ 0.58
SPG11-201ENST00000261866 ERICH6Q7L0X2 663 aa18.62■□□□□ 0.57
SPG11-201ENST00000261866 CCER1Q8TC90 406 aaPredicted RBP18.54■□□□□ 0.56
SPG11-201ENST00000261866 MYT1LQ9UL68 1186 aa18.46■□□□□ 0.55
SPG11-201ENST00000261866 CHIC1Q5VXU3 224 aa18.41■□□□□ 0.54
SPG11-201ENST00000261866 MYT1Q01538 1121 aa18.38■□□□□ 0.53
SPG11-201ENST00000261866 YTHDC1Q96MU7 727 aaKnown RBP18.38■□□□□ 0.53
SPG11-201ENST00000261866 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.37■□□□□ 0.53
SPG11-201ENST00000261866 HNRNPUL2Q1KMD3 747 aaKnown RBP18.37■□□□□ 0.53
SPG11-201ENST00000261866 ITGAEP38570 1179 aa18.33■□□□□ 0.52
SPG11-201ENST00000261866 CNGB1Q14028 1251 aaPredicted RBP18.26■□□□□ 0.51
SPG11-201ENST00000261866 POLR3GLQ9BT43 218 aa18.26■□□□□ 0.51
SPG11-201ENST00000261866 CENPBP07199 599 aaPredicted RBP18.1■□□□□ 0.49
SPG11-201ENST00000261866 PABPN1Q86U42 306 aaKnown RBP eCLIP18■□□□□ 0.47
SPG11-201ENST00000261866 SLC4A1APQ9BWU0 796 aaKnown RBP17.99■□□□□ 0.47
SPG11-201ENST00000261866 LOC105371045A0A1W2PR82 267 aa17.98■□□□□ 0.47
SPG11-201ENST00000261866 ZEB1P37275 1124 aaPredicted RBP17.98■□□□□ 0.47
SPG11-201ENST00000261866 NEFLP07196 543 aa17.96■□□□□ 0.47
SPG11-201ENST00000261866 ABCC9O60706 1549 aa17.81■□□□□ 0.44
SPG11-201ENST00000261866 FBLN2P98095 1184 aa17.75■□□□□ 0.43
SPG11-201ENST00000261866 DAXXQ9UER7 740 aaPredicted RBP17.7■□□□□ 0.42
SPG11-201ENST00000261866 TRIM26Q12899 539 aaPredicted RBP17.7■□□□□ 0.42
SPG11-201ENST00000261866 FAM50AQ14320 339 aaKnown RBP17.7■□□□□ 0.42
SPG11-201ENST00000261866 ARID3CA6NKF2 412 aa17.65■□□□□ 0.42
SPG11-201ENST00000261866 TRIM52Q96A61 297 aa17.61■□□□□ 0.41
SPG11-201ENST00000261866 BCL11AQ9H165 835 aa17.59■□□□□ 0.41
SPG11-201ENST00000261866 NEUROD1Q13562 356 aa17.56■□□□□ 0.4
SPG11-201ENST00000261866 ZNF326Q5BKZ1 582 aaKnown RBP17.55■□□□□ 0.4
SPG11-201ENST00000261866 HRCP23327 699 aa17.51■□□□□ 0.39
SPG11-201ENST00000261866 PLPPR3Q6T4P5 718 aa17.51■□□□□ 0.39
SPG11-201ENST00000261866 P3H3Q8IVL6 736 aa17.47■□□□□ 0.39
SPG11-201ENST00000261866 SLC24A1O60721 1099 aa17.45■□□□□ 0.38
SPG11-201ENST00000261866 BCANQ96GW7 911 aa17.45■□□□□ 0.38
SPG11-201ENST00000261866 CLSPNQ9HAW4 1339 aa17.39■□□□□ 0.37
SPG11-201ENST00000261866 ZNF777Q9ULD5 760 aaPredicted RBP17.29■□□□□ 0.36
SPG11-201ENST00000261866 ZNF316A6NFI3 1004 aaPredicted RBP17.29■□□□□ 0.36
SPG11-201ENST00000261866 DIEXFQ68CQ4 756 aaKnown RBP17.2■□□□□ 0.34
SPG11-201ENST00000261866 SENP3Q9H4L4 574 aaPredicted RBP17.12■□□□□ 0.33
SPG11-201ENST00000261866 CHGAP10645 457 aaKnown RBP17.09■□□□□ 0.33
SPG11-201ENST00000261866 RTL5Q5HYW3 569 aaPredicted RBP17.04■□□□□ 0.32
SPG11-201ENST00000261866 CANXP27824 592 aaKnown RBP17.03■□□□□ 0.32
SPG11-201ENST00000261866 ESF1Q9H501 851 aaKnown RBP17.03■□□□□ 0.32
SPG11-201ENST00000261866 STAG3Q9UJ98 1225 aa17■□□□□ 0.31
SPG11-201ENST00000261866 ANP32CO43423 234 aa17■□□□□ 0.31
SPG11-201ENST00000261866 ZBTB47Q9UFB7 747 aaPredicted RBP17■□□□□ 0.31
SPG11-201ENST00000261866 PLEKHG5O94827 1062 aa16.99■□□□□ 0.31
SPG11-201ENST00000261866 SCRIBQ14160 1630 aa16.93■□□□□ 0.3
SPG11-201ENST00000261866 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.93■□□□□ 0.32e-6■■■□□ 18.5
SPG11-201ENST00000261866 SCAF1Q9H7N4 1312 aaKnown RBP16.9■□□□□ 0.3
SPG11-201ENST00000261866 NEFMP07197 916 aa16.89■□□□□ 0.29
SPG11-201ENST00000261866 CHIC2Q9UKJ5 165 aa16.88■□□□□ 0.29
SPG11-201ENST00000261866 NPM1P06748 294 aaKnown RBP eCLIP16.86■□□□□ 0.29
SPG11-201ENST00000261866 CSRNP3Q8WYN3 585 aa16.85■□□□□ 0.29
SPG11-201ENST00000261866 SALL2Q9Y467 1007 aaPredicted RBP16.85■□□□□ 0.29
SPG11-201ENST00000261866 A0A0G2JS52 829 aa16.84■□□□□ 0.29
SPG11-201ENST00000261866 GTF3C3Q9Y5Q9 886 aa16.8■□□□□ 0.28
SPG11-201ENST00000261866 ZBTB7CA1YPR0 619 aa16.79■□□□□ 0.28
SPG11-201ENST00000261866 CDK11AQ9UQ88 783 aaPredicted RBP16.77■□□□□ 0.28
SPG11-201ENST00000261866 NPM2Q86SE8 214 aaKnown RBP16.76■□□□□ 0.27
SPG11-201ENST00000261866 KDM2AQ9Y2K7 1162 aa16.73■□□□□ 0.27
SPG11-201ENST00000261866 KCNH8Q96L42 1107 aa16.7■□□□□ 0.26
SPG11-201ENST00000261866 CHMP7Q8WUX9 453 aaPredicted RBP16.67■□□□□ 0.26
SPG11-201ENST00000261866 FAM9BQ8IZU0 186 aa16.67■□□□□ 0.26
SPG11-201ENST00000261866 HIRIP3Q9BW71 556 aaPredicted RBP16.64■□□□□ 0.25
SPG11-201ENST00000261866 C14orf37Q86TY3 774 aa16.64■□□□□ 0.25
SPG11-201ENST00000261866 ARXQ96QS3 562 aa16.62■□□□□ 0.25
SPG11-201ENST00000261866 SENP3-EIF4A1A0A087X0R7 540 aa16.61■□□□□ 0.25
SPG11-201ENST00000261866 TONSLQ96HA7 1378 aa16.61■□□□□ 0.25
SPG11-201ENST00000261866 DDX10Q13206 875 aaKnown RBP16.6■□□□□ 0.25
SPG11-201ENST00000261866 ARID4BQ4LE39 1312 aaPredicted RBP16.56■□□□□ 0.24
SPG11-201ENST00000261866 EIF5BO60841 1220 aaKnown RBP16.55■□□□□ 0.24
SPG11-201ENST00000261866 HNRNPUQ00839 825 aaKnown RBP eCLIP16.53■□□□□ 0.24
SPG11-201ENST00000261866 RRP7BPQ9NSQ0 103 aa16.53■□□□□ 0.24
SPG11-201ENST00000261866 TULP1O00294 542 aaPredicted RBP16.5■□□□□ 0.23
SPG11-201ENST00000261866 FKBP8Q14318 412 aa16.5■□□□□ 0.23
SPG11-201ENST00000261866 PPP1R15AO75807 674 aaPredicted RBP16.49■□□□□ 0.23
SPG11-201ENST00000261866 TSPY4P0CV99 314 aa16.49■□□□□ 0.23
SPG11-201ENST00000261866 TSPY10P0CW01 314 aa16.49■□□□□ 0.23
SPG11-201ENST00000261866 HSP90AA1P07900 732 aaKnown RBP16.46■□□□□ 0.23
SPG11-201ENST00000261866 RGL3Q3MIN7 710 aa16.46■□□□□ 0.23
SPG11-201ENST00000261866 IRX6P78412 446 aaPredicted RBP16.44■□□□□ 0.22
SPG11-201ENST00000261866 MTUS2Q5JR59 1369 aa16.44■□□□□ 0.22
SPG11-201ENST00000261866 TMC1Q8TDI8 760 aa16.43■□□□□ 0.22
SPG11-201ENST00000261866 ANP32AP39687 249 aaKnown RBP16.43■□□□□ 0.22
SPG11-201ENST00000261866 HAP1P54257 671 aaPredicted RBP16.42■□□□□ 0.22
SPG11-201ENST00000261866 WDR43Q15061 677 aaKnown RBP eCLIP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms