Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.48■□□□□ 0.23
NEK3P51956 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.48■□□□□ 0.23
NEK3P51956 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
NEK3P51956 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
NEK3P51956 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
NEK3P51956 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 AC055876.3-201ENST00000431496 288 ntBASIC16.48■□□□□ 0.23
NEK3P51956 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.48■□□□□ 0.23
NEK3P51956 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.48■□□□□ 0.23
NEK3P51956 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 AC093214.1-201ENST00000511688 1107 ntBASIC16.48■□□□□ 0.23
NEK3P51956 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 AC069120.2-201ENST00000524091 540 ntBASIC16.48■□□□□ 0.23
NEK3P51956 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.48■□□□□ 0.23
NEK3P51956 SPCS2P1-201ENST00000561636 679 ntBASIC16.48■□□□□ 0.23
NEK3P51956 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 AL390955.2-201ENST00000603032 514 ntBASIC16.48■□□□□ 0.23
NEK3P51956 AL158211.3-201ENST00000607385 239 ntBASIC16.48■□□□□ 0.23
NEK3P51956 AC138649.4-201ENST00000612222 287 ntBASIC16.48■□□□□ 0.23
NEK3P51956 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.48■□□□□ 0.23
NEK3P51956 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.48■□□□□ 0.23
NEK3P51956 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.48■□□□□ 0.23
NEK3P51956 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.48■□□□□ 0.23
NEK3P51956 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NEK3P51956 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.47■□□□□ 0.23
NEK3P51956 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
NEK3P51956 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 MIR648-201ENST00000385046 94 ntBASIC16.47■□□□□ 0.23
NEK3P51956 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
NEK3P51956 TREML5P-201ENST00000421694 576 ntBASIC16.47■□□□□ 0.23
NEK3P51956 AL353705.2-201ENST00000428243 662 ntBASIC16.47■□□□□ 0.23
NEK3P51956 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 RNA5SP410-201ENST00000516285 106 ntBASIC16.47■□□□□ 0.23
NEK3P51956 IGHV3-42-201ENST00000520410 361 ntBASIC16.47■□□□□ 0.23
NEK3P51956 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.47■□□□□ 0.23
NEK3P51956 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.47■□□□□ 0.23
NEK3P51956 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
NEK3P51956 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.47■□□□□ 0.23
NEK3P51956 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.47■□□□□ 0.23
NEK3P51956 AC007967.4-201ENST00000614700 386 ntBASIC16.47■□□□□ 0.23
NEK3P51956 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.47■□□□□ 0.23
NEK3P51956 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.47■□□□□ 0.23
NEK3P51956 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NEK3P51956 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
NEK3P51956 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NEK3P51956 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NEK3P51956 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
NEK3P51956 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NEK3P51956 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.46■□□□□ 0.23
NEK3P51956 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms