Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 AC132938.5-201ENST00000624980 1813 ntBASIC12.09□□□□□ -0.47
HLA-DQA1P01909 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 TOP3BP1-201ENST00000420768 1380 ntBASIC12.09□□□□□ -0.47
HLA-DQA1P01909 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 AC104076.2-201ENST00000448912 469 ntBASIC12.09□□□□□ -0.47
HLA-DQA1P01909 KRT18P38-201ENST00000449496 1282 ntBASIC12.09□□□□□ -0.47
HLA-DQA1P01909 AC092597.1-201ENST00000487352 616 ntBASIC12.09□□□□□ -0.47
HLA-DQA1P01909 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 SPEG-225ENST00000617028 815 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DQA1P01909 REXO1L1P-202ENST00000608646 1974 ntBASIC12.09□□□□□ -0.47
HLA-DQA1P01909 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC12.08□□□□□ -0.47
HLA-DQA1P01909 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
HLA-DQA1P01909 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AC126365.1-201ENST00000578585 1514 ntBASIC12.08□□□□□ -0.48
HLA-DQA1P01909 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 REXO1L2P-201ENST00000425429 2069 ntBASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AL731571.1-201ENST00000617058 5428 ntBASIC12.08□□□□□ -0.48
HLA-DQA1P01909 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 HBZP1-201ENST00000354915 429 ntBASIC12.08□□□□□ -0.48
HLA-DQA1P01909 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AL671277.2-201ENST00000458060 996 ntBASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AC063952.2-201ENST00000498792 1227 ntBASIC12.08□□□□□ -0.48
HLA-DQA1P01909 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AC020765.3-201ENST00000613051 740 ntBASIC12.08□□□□□ -0.48
HLA-DQA1P01909 LITAF-220ENST00000620789 692 ntTSL 5 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AC079602.3-201ENST00000623931 403 ntBASIC12.08□□□□□ -0.48
HLA-DQA1P01909 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DQA1P01909 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms