Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
SHANK3Q9BYB0 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.01■■■□□ 2.55
SHANK3Q9BYB0 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SHANK3Q9BYB0 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC31.01■■■□□ 2.55
SHANK3Q9BYB0 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
SHANK3Q9BYB0 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC31■■■□□ 2.55
SHANK3Q9BYB0 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SHANK3Q9BYB0 AC106739.1-201ENST00000617035 715 ntBASIC31■■■□□ 2.55
SHANK3Q9BYB0 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
SHANK3Q9BYB0 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SHANK3Q9BYB0 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
SHANK3Q9BYB0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
SHANK3Q9BYB0 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
SHANK3Q9BYB0 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC30.99■■■□□ 2.55
SHANK3Q9BYB0 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
SHANK3Q9BYB0 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 AC005837.3-201ENST00000612163 286 ntBASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 FOXO3B-201ENST00000395675 1928 ntBASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC30.98■■■□□ 2.55
SHANK3Q9BYB0 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SHANK3Q9BYB0 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC30.97■■■□□ 2.55
SHANK3Q9BYB0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SHANK3Q9BYB0 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHANK3Q9BYB0 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC30.96■■■□□ 2.55
SHANK3Q9BYB0 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
SHANK3Q9BYB0 AC026271.2-201ENST00000428091 497 ntBASIC30.95■■■□□ 2.55
SHANK3Q9BYB0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC30.95■■■□□ 2.55
SHANK3Q9BYB0 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC30.95■■■□□ 2.55
SHANK3Q9BYB0 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC30.95■■■□□ 2.55
SHANK3Q9BYB0 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
SHANK3Q9BYB0 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
SHANK3Q9BYB0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC30.94■■■□□ 2.54
SHANK3Q9BYB0 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SHANK3Q9BYB0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC30.93■■■□□ 2.54
SHANK3Q9BYB0 AC096887.2-201ENST00000623443 1957 ntBASIC30.92■■■□□ 2.54
SHANK3Q9BYB0 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC30.92■■■□□ 2.54
SHANK3Q9BYB0 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC30.92■■■□□ 2.54
SHANK3Q9BYB0 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SHANK3Q9BYB0 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
SHANK3Q9BYB0 AC142086.6-201ENST00000621154 1765 ntBASIC30.91■■■□□ 2.54
SHANK3Q9BYB0 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHANK3Q9BYB0 EBPL-204ENST00000378272 766 ntTSL 3 BASIC30.9■■■□□ 2.54
SHANK3Q9BYB0 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC30.9■■■□□ 2.54
SHANK3Q9BYB0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC30.9■■■□□ 2.54
SHANK3Q9BYB0 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
SHANK3Q9BYB0 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SHANK3Q9BYB0 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SHANK3Q9BYB0 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
SHANK3Q9BYB0 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
SHANK3Q9BYB0 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHANK3Q9BYB0 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SHANK3Q9BYB0 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHANK3Q9BYB0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
SHANK3Q9BYB0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC30.88■■■□□ 2.53
SHANK3Q9BYB0 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHANK3Q9BYB0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC30.87■■■□□ 2.53
SHANK3Q9BYB0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC30.87■■■□□ 2.53
SHANK3Q9BYB0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHANK3Q9BYB0 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC30.86■■■□□ 2.53
SHANK3Q9BYB0 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHANK3Q9BYB0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
SHANK3Q9BYB0 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
SHANK3Q9BYB0 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC30.85■■■□□ 2.53
SHANK3Q9BYB0 LGR4-203ENST00000480977 492 ntTSL 2 BASIC30.84■■■□□ 2.53
SHANK3Q9BYB0 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC30.84■■■□□ 2.53
SHANK3Q9BYB0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
SHANK3Q9BYB0 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC30.84■■■□□ 2.53
SHANK3Q9BYB0 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC30.83■■■□□ 2.53
SHANK3Q9BYB0 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC30.83■■■□□ 2.53
SHANK3Q9BYB0 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30.83■■■□□ 2.53
SHANK3Q9BYB0 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC30.83■■■□□ 2.53
SHANK3Q9BYB0 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC30.83■■■□□ 2.53
SHANK3Q9BYB0 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SHANK3Q9BYB0 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.83■■■□□ 2.53
SHANK3Q9BYB0 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SHANK3Q9BYB0 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SHANK3Q9BYB0 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC30.82■■■□□ 2.52
SHANK3Q9BYB0 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
SHANK3Q9BYB0 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC30.81■■■□□ 2.52
SHANK3Q9BYB0 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
SHANK3Q9BYB0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC30.81■■■□□ 2.52
SHANK3Q9BYB0 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SHANK3Q9BYB0 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC30.8■■■□□ 2.52
SHANK3Q9BYB0 AC135279.3-201ENST00000610945 1311 ntBASIC30.8■■■□□ 2.52
SHANK3Q9BYB0 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC30.8■■■□□ 2.52
SHANK3Q9BYB0 AC104564.3-201ENST00000582367 638 ntBASIC30.8■■■□□ 2.52
SHANK3Q9BYB0 MIR6722-201ENST00000617286 78 ntBASIC30.8■■■□□ 2.52
SHANK3Q9BYB0 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SHANK3Q9BYB0 AC090877.2-201ENST00000558441 1738 ntBASIC30.8■■■□□ 2.52
SHANK3Q9BYB0 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHANK3Q9BYB0 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHANK3Q9BYB0 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHANK3Q9BYB0 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHANK3Q9BYB0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC30.78■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms