Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SPENQ96T58 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SPENQ96T58 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SPENQ96T58 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SPENQ96T58 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.47■■□□□ 1.03
SPENQ96T58 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SPENQ96T58 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SPENQ96T58 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
SPENQ96T58 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.47■■□□□ 1.03
SPENQ96T58 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SPENQ96T58 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SPENQ96T58 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.47■■□□□ 1.03
SPENQ96T58 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SPENQ96T58 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SPENQ96T58 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SPENQ96T58 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.46■■□□□ 1.03
SPENQ96T58 AP004609.3-201ENST00000610705 1884 ntBASIC21.46■■□□□ 1.03
SPENQ96T58 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SPENQ96T58 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SPENQ96T58 AL355001.2-201ENST00000620617 1191 ntBASIC21.46■■□□□ 1.03
SPENQ96T58 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SPENQ96T58 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
SPENQ96T58 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SPENQ96T58 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
SPENQ96T58 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.45■■□□□ 1.02
SPENQ96T58 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SPENQ96T58 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.45■■□□□ 1.02
SPENQ96T58 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.45■■□□□ 1.02
SPENQ96T58 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SPENQ96T58 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
SPENQ96T58 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SPENQ96T58 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SPENQ96T58 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
SPENQ96T58 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SPENQ96T58 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.43■■□□□ 1.02
SPENQ96T58 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.43■■□□□ 1.02
SPENQ96T58 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.43■■□□□ 1.02
SPENQ96T58 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.43■■□□□ 1.02
SPENQ96T58 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.43■■□□□ 1.02
SPENQ96T58 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.43■■□□□ 1.02
SPENQ96T58 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SPENQ96T58 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SPENQ96T58 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.43■■□□□ 1.02
SPENQ96T58 AC097381.1-201ENST00000429019 1296 ntBASIC21.42■■□□□ 1.02
SPENQ96T58 AC096887.2-201ENST00000623443 1957 ntBASIC21.42■■□□□ 1.02
SPENQ96T58 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.42■■□□□ 1.02
SPENQ96T58 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.42■■□□□ 1.02
SPENQ96T58 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.42■■□□□ 1.02
SPENQ96T58 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
SPENQ96T58 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
SPENQ96T58 AL162430.1-201ENST00000480705 870 ntBASIC21.42■■□□□ 1.02
SPENQ96T58 SNX5-217ENST00000606557 1087 ntBASIC21.42■■□□□ 1.02
SPENQ96T58 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
SPENQ96T58 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.42■■□□□ 1.02
SPENQ96T58 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SPENQ96T58 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SPENQ96T58 AC024257.2-201ENST00000549699 147 ntBASIC21.41■■□□□ 1.02
SPENQ96T58 AC142381.2-201ENST00000566120 298 ntBASIC21.41■■□□□ 1.02
SPENQ96T58 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.41■■□□□ 1.02
SPENQ96T58 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SPENQ96T58 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.41■■□□□ 1.02
SPENQ96T58 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.41■■□□□ 1.02
SPENQ96T58 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.41■■□□□ 1.02
SPENQ96T58 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SPENQ96T58 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SPENQ96T58 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
SPENQ96T58 FOXO3B-201ENST00000395675 1928 ntBASIC21.4■■□□□ 1.02
SPENQ96T58 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.4■■□□□ 1.02
SPENQ96T58 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SPENQ96T58 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.4■■□□□ 1.02
SPENQ96T58 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SPENQ96T58 UNC93B3-201ENST00000308076 687 ntBASIC21.39■■□□□ 1.02
SPENQ96T58 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.39■■□□□ 1.02
SPENQ96T58 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.39■■□□□ 1.02
SPENQ96T58 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SPENQ96T58 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.39■■□□□ 1.01
SPENQ96T58 MIR939-201ENST00000401314 82 ntBASIC21.39■■□□□ 1.01
SPENQ96T58 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.39■■□□□ 1.01
SPENQ96T58 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SPENQ96T58 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
SPENQ96T58 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.38■■□□□ 1.01
SPENQ96T58 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SPENQ96T58 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SPENQ96T58 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SPENQ96T58 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SPENQ96T58 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.37■■□□□ 1.01
SPENQ96T58 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SPENQ96T58 AC090192.1-201ENST00000517740 490 ntBASIC21.37■■□□□ 1.01
SPENQ96T58 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.37■■□□□ 1.01
SPENQ96T58 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SPENQ96T58 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SPENQ96T58 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SPENQ96T58 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SPENQ96T58 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.36■■□□□ 1.01
SPENQ96T58 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.36■■□□□ 1.01
SPENQ96T58 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SPENQ96T58 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SPENQ96T58 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SPENQ96T58 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.36■■□□□ 1.01
SPENQ96T58 PBX2P1-201ENST00000493219 1291 ntBASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms