Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MFGE8-205ENST00000558018 1989 ntTSL 218.7■□□□□ 0.588e-24■■■■□ 23.3
DDX55Q8NHQ9 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.58e-24■■■■□ 23.3
DDX55Q8NHQ9 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.734e-6■■■■□ 23.3
DDX55Q8NHQ9 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.75■□□□□ 0.438e-8■■■■□ 23.3
DDX55Q8NHQ9 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.298e-8■■■■□ 23.3
DDX55Q8NHQ9 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.188e-8■■■■□ 23.3
DDX55Q8NHQ9 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.178e-8■■■■□ 23.3
DDX55Q8NHQ9 PYGO2-202ENST00000368457 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.282e-9■■■■□ 23.3
DDX55Q8NHQ9 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.127e-15■■■■□ 23.3
DDX55Q8NHQ9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC27.15■■□□□ 1.942e-9■■■■□ 23.2
DDX55Q8NHQ9 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.52e-9■■■■□ 23.2
DDX55Q8NHQ9 SNHG12-201ENST00000461448 1629 ntTSL 1 (best)23.17■■□□□ 1.32e-9■■■■□ 23.2
DDX55Q8NHQ9 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.242e-9■■■■□ 23.2
DDX55Q8NHQ9 RPL15-212ENST00000490223 1785 ntTSL 222.65■■□□□ 1.222e-9■■■■□ 23.2
DDX55Q8NHQ9 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.192e-9■■■■□ 23.2
DDX55Q8NHQ9 SNHG12-203ENST00000464115 712 ntTSL 322.45■■□□□ 1.182e-9■■■■□ 23.2
DDX55Q8NHQ9 SNHG12-208ENST00000481220 751 ntTSL 322.45■■□□□ 1.182e-9■■■■□ 23.2
DDX55Q8NHQ9 RPL15-206ENST00000422218 588 ntTSL 421.58■■□□□ 1.052e-9■■■■□ 23.2
DDX55Q8NHQ9 TIMM17B-207ENST00000490755 666 ntTSL 521.47■■□□□ 1.032e-9■■■■□ 23.2
DDX55Q8NHQ9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.68■□□□□ 0.92e-9■■■■□ 23.2
DDX55Q8NHQ9 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.62■□□□□ 0.892e-9■■■■□ 23.2
DDX55Q8NHQ9 TIMM17B-206ENST00000472645 804 ntTSL 320.24■□□□□ 0.832e-9■■■■□ 23.2
DDX55Q8NHQ9 SNHG12-206ENST00000474814 1903 ntTSL 220.04■□□□□ 0.82e-9■■■■□ 23.2
DDX55Q8NHQ9 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC18.73■□□□□ 0.592e-9■■■■□ 23.2
DDX55Q8NHQ9 TIMM17B-205ENST00000466995 1528 ntTSL 218.1■□□□□ 0.492e-9■■■■□ 23.2
DDX55Q8NHQ9 SNHG12-209ENST00000481368 1588 ntTSL 1 (best)17.79■□□□□ 0.442e-9■■■■□ 23.2
DDX55Q8NHQ9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.372e-9■■■■□ 23.2
DDX55Q8NHQ9 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC17.05■□□□□ 0.322e-9■■■■□ 23.2
DDX55Q8NHQ9 SNHG12-202ENST00000461832 675 ntTSL 216.82■□□□□ 0.282e-9■■■■□ 23.2
DDX55Q8NHQ9 SNHG12-205ENST00000470977 1098 ntTSL 1 (best)16.71■□□□□ 0.272e-9■■■■□ 23.2
DDX55Q8NHQ9 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC16.61■□□□□ 0.252e-9■■■■□ 23.2
DDX55Q8NHQ9 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.22e-9■■■■□ 23.2
DDX55Q8NHQ9 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.172e-9■■■■□ 23.2
DDX55Q8NHQ9 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.162e-9■■■■□ 23.2
DDX55Q8NHQ9 REEP5-204ENST00000497856 1779 ntTSL 1 (best)15.48■□□□□ 0.072e-9■■■■□ 23.2
DDX55Q8NHQ9 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.064e-7■■■■□ 23.2
DDX55Q8NHQ9 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.014e-7■■■■□ 23.2
DDX55Q8NHQ9 RPL15-202ENST00000354811 820 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.072e-9■■■■□ 23.2
DDX55Q8NHQ9 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.12e-9■■■■□ 23.2
DDX55Q8NHQ9 REEP5-206ENST00000511865 1187 ntTSL 214.33□□□□□ -0.122e-9■■■■□ 23.2
DDX55Q8NHQ9 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.194e-7■■■■□ 23.2
DDX55Q8NHQ9 RPL15-203ENST00000412097 562 ntTSL 513.45□□□□□ -0.262e-9■■■■□ 23.2
DDX55Q8NHQ9 TSKU-203ENST00000527881 3554 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.282e-9■■■■□ 23.2
DDX55Q8NHQ9 RNF213-202ENST00000411702 6428 ntTSL 212.91□□□□□ -0.344e-6■■■■□ 23.2
DDX55Q8NHQ9 RPL15-204ENST00000413699 2053 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.352e-9■■■■□ 23.2
DDX55Q8NHQ9 RPL15-210ENST00000456530 2835 ntTSL 1 (best) BASIC12.83□□□□□ -0.362e-9■■■■□ 23.2
DDX55Q8NHQ9 RPL15-207ENST00000434031 650 ntTSL 512.25□□□□□ -0.452e-9■■■■□ 23.2
DDX55Q8NHQ9 RPL15-211ENST00000465786 1729 ntTSL 1 (best)11.31□□□□□ -0.62e-9■■■■□ 23.2
DDX55Q8NHQ9 SNHG12-211ENST00000488745 1365 ntTSL 1 (best) BASIC10.47□□□□□ -0.732e-9■■■■□ 23.2
DDX55Q8NHQ9 RNF213-203ENST00000427003 3552 ntTSL 1 (best)8.53□□□□□ -1.044e-6■■■■□ 23.2
DDX55Q8NHQ9 RPL15-209ENST00000436146 1990 ntTSL 57.89□□□□□ -1.152e-9■■■■□ 23.2
DDX55Q8NHQ9 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC7.75□□□□□ -1.174e-6■■■■□ 23.2
DDX55Q8NHQ9 RNF213-210ENST00000560083 4212 ntTSL 27.74□□□□□ -1.174e-6■■■■□ 23.2
DDX55Q8NHQ9 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.374e-6■■■■□ 23.2
DDX55Q8NHQ9 AC005261.2-201ENST00000593427 4258 ntBASIC6.05□□□□□ -1.441e-13■■■■□ 23.2
DDX55Q8NHQ9 NME1-201ENST00000013034 796 ntTSL 3 BASIC14.14□□□□□ -0.155e-7■■■■□ 23.2
DDX55Q8NHQ9 ARPC1B-220ENST00000491294 1051 ntTSL 521.91■■□□□ 1.11e-6■■■■□ 23.2
DDX55Q8NHQ9 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.041e-6■■■■□ 23.2
DDX55Q8NHQ9 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.651e-6■■■■□ 23.2
DDX55Q8NHQ9 ARPC1B-214ENST00000463078 537 ntTSL 318.84■□□□□ 0.611e-6■■■■□ 23.2
DDX55Q8NHQ9 ARPC1B-217ENST00000481997 945 ntTSL 217.31■□□□□ 0.361e-6■■■■□ 23.2
DDX55Q8NHQ9 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.38e-30■■■■□ 23.1
DDX55Q8NHQ9 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC15.49■□□□□ 0.078e-30■■■■□ 23.1
DDX55Q8NHQ9 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC14.86□□□□□ -0.038e-30■■■■□ 23.1
DDX55Q8NHQ9 MAP2K3-208ENST00000496046 2089 ntTSL 514.04□□□□□ -0.168e-30■■■■□ 23.1
DDX55Q8NHQ9 MAP2K3-204ENST00000395491 2401 ntTSL 213.68□□□□□ -0.228e-30■■■■□ 23.1
DDX55Q8NHQ9 MARK4-203ENST00000587566 553 ntTSL 517.93■□□□□ 0.463e-8■■■■□ 23.1
DDX55Q8NHQ9 AES-212ENST00000592414 3274 ntTSL 212.67□□□□□ -0.384e-17■■■■□ 23.1
DDX55Q8NHQ9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.316e-10■■■■□ 23.1
DDX55Q8NHQ9 LAMB2-212ENST00000484713 412 ntTSL 215.08■□□□□ 01e-6■■■■□ 23
DDX55Q8NHQ9 STK35-202ENST00000493263 1595 ntTSL 1 (best)24.18■■□□□ 1.461e-13■■■■□ 23
DDX55Q8NHQ9 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.441e-13■■■■□ 23
DDX55Q8NHQ9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.613e-8■■■■□ 23
DDX55Q8NHQ9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.513e-8■■■■□ 23
DDX55Q8NHQ9 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.097e-19■■■■□ 23
DDX55Q8NHQ9 GRIPAP1-201ENST00000376423 3031 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.152e-37■■■■□ 23
DDX55Q8NHQ9 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC13.67□□□□□ -0.222e-37■■■■□ 23
DDX55Q8NHQ9 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC13.6□□□□□ -0.232e-37■■■■□ 23
DDX55Q8NHQ9 GRIPAP1-212ENST00000619149 2828 ntTSL 212.75□□□□□ -0.372e-37■■■■□ 23
DDX55Q8NHQ9 TRIM41-203ENST00000503114 1904 ntTSL 1 (best)20.19■□□□□ 0.827e-7■■■■□ 23
DDX55Q8NHQ9 TRIM41-207ENST00000515223 5707 ntTSL 217.41■□□□□ 0.387e-7■■■■□ 23
DDX55Q8NHQ9 S100A1-203ENST00000368698 784 ntTSL 2 BASIC14.03□□□□□ -0.161e-12■■■■□ 23
DDX55Q8NHQ9 S100A1-201ENST00000292169 594 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.351e-12■■■■□ 23
DDX55Q8NHQ9 S100A1-205ENST00000469893 2621 ntTSL 1 (best)12.77□□□□□ -0.371e-12■■■■□ 23
DDX55Q8NHQ9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.745e-9■■■■□ 23
DDX55Q8NHQ9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC24.42■■□□□ 1.55e-9■■■■□ 23
DDX55Q8NHQ9 C19orf24-203ENST00000485191 1675 ntTSL 222.58■■□□□ 1.215e-9■■■■□ 23
DDX55Q8NHQ9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.945e-9■■■■□ 23
DDX55Q8NHQ9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.945e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.65■□□□□ 0.745e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-207ENST00000443708 1724 ntTSL 519.59■□□□□ 0.735e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.675e-9■■■■□ 23
DDX55Q8NHQ9 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.96■□□□□ 0.635e-9■■■■□ 23
DDX55Q8NHQ9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18■□□□□ 0.475e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-212ENST00000463664 1922 ntTSL 517.23■□□□□ 0.355e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-202ENST00000423070 1887 ntTSL 516.93■□□□□ 0.35e-9■■■■□ 23
DDX55Q8NHQ9 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.295e-9■■■■□ 23
DDX55Q8NHQ9 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.295e-9■■■■□ 23
DDX55Q8NHQ9 NSMF-207ENST00000371482 2888 ntTSL 1 (best)16.79■□□□□ 0.285e-9■■■■□ 23
DDX55Q8NHQ9 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC16.25■□□□□ 0.195e-9■■■■□ 23
Retrieved 100 of 15,504 protein–RNA pairs in 81.4 ms