RNA–Protein interactions for RNA: ENST00000314355.6

CKS2-201, Transcript of CDC28 protein kinase regulatory subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS2, Length 613 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2-201ENST00000314355 NISCHQ9Y2I1 1504 aa30.98■■■□□ 2.55
CKS2-201ENST00000314355 CCDC180Q9P1Z9 1646 aa27.64■■■□□ 2.02
CKS2-201ENST00000314355 ABCC9O60706 1549 aa27.55■■■□□ 2
CKS2-201ENST00000314355 DCAF8L2P0C7V8 631 aa26.37■■□□□ 1.81
CKS2-201ENST00000314355 RB1CC1Q8TDY2 1594 aa26.33■■□□□ 1.8
CKS2-201ENST00000314355 NACADO15069 1562 aa26.19■■□□□ 1.78
CKS2-201ENST00000314355 MYO15BQ96JP2 1530 aa25.86■■□□□ 1.73
CKS2-201ENST00000314355 PABPN1Q86U42 306 aaKnown RBP eCLIP25.76■■□□□ 1.71
CKS2-201ENST00000314355 ZCCHC6Q5VYS8 1495 aaKnown RBP25.66■■□□□ 1.7
CKS2-201ENST00000314355 DNAJC5BQ9UF47 199 aa25.61■■□□□ 1.69
CKS2-201ENST00000314355 DCAF1Q9Y4B6 1507 aa25.59■■□□□ 1.69
CKS2-201ENST00000314355 UNC13AQ9UPW8 1703 aa25.51■■□□□ 1.68
CKS2-201ENST00000314355 BICRAQ9NZM4 1560 aa25.37■■□□□ 1.65
CKS2-201ENST00000314355 SCRIBQ14160 1630 aa25.23■■□□□ 1.63
CKS2-201ENST00000314355 SHROOM4Q9ULL8 1493 aa25.21■■□□□ 1.63
CKS2-201ENST00000314355 EIF4G1Q04637 1599 aaKnown RBP24.84■■□□□ 1.57
CKS2-201ENST00000314355 CC2D2AQ9P2K1 1620 aa24.83■■□□□ 1.57
CKS2-201ENST00000314355 CECR2Q9BXF3 1484 aa24.82■■□□□ 1.56
CKS2-201ENST00000314355 NCAPD3P42695 1498 aa24.17■■□□□ 1.46
CKS2-201ENST00000314355 ATAD2BQ9ULI0 1458 aa24.11■■□□□ 1.45
CKS2-201ENST00000314355 SMARCA2P51531 1590 aa24.09■■□□□ 1.45
CKS2-201ENST00000314355 SMARCA4P51532 1647 aa24.08■■□□□ 1.45
CKS2-201ENST00000314355 BAZ1AQ9NRL2 1556 aaPredicted RBP24.08■■□□□ 1.44
CKS2-201ENST00000314355 HMGXB3Q12766 1538 aa23.95■■□□□ 1.43
CKS2-201ENST00000314355 BAZ1BQ9UIG0 1483 aaKnown RBP23.94■■□□□ 1.42
CKS2-201ENST00000314355 ERCC6Q03468 1493 aa23.87■■□□□ 1.41
CKS2-201ENST00000314355 MROH2BQ7Z745 1585 aa23.83■■□□□ 1.41
CKS2-201ENST00000314355 PEG3Q9GZU2 1588 aa23.82■■□□□ 1.4
CKS2-201ENST00000314355 CUX2O14529 1486 aa23.68■■□□□ 1.38
CKS2-201ENST00000314355 NESP48681 1621 aa23.66■■□□□ 1.38
CKS2-201ENST00000314355 LAMC3Q9Y6N6 1575 aa23.58■■□□□ 1.37
CKS2-201ENST00000314355 PDS5BQ9NTI5 1447 aa23.56■■□□□ 1.36
CKS2-201ENST00000314355 WIZO95785 1651 aa23.54■■□□□ 1.36
CKS2-201ENST00000314355 CADPSQ9ULU8 1353 aa23.51■■□□□ 1.35
CKS2-201ENST00000314355 DNAJC5Q9H3Z4 198 aa23.49■■□□□ 1.35
CKS2-201ENST00000314355 RSF1Q96T23 1441 aaPredicted RBP23.47■■□□□ 1.35
CKS2-201ENST00000314355 TOP2AP11388 1531 aaKnown RBP23.3■■□□□ 1.32
CKS2-201ENST00000314355 KIF21AQ7Z4S6 1674 aa23.3■■□□□ 1.32
CKS2-201ENST00000314355 THOC2Q8NI27 1593 aaKnown RBP23.3■■□□□ 1.32
CKS2-201ENST00000314355 MRC2Q9UBG0 1479 aa23.24■■□□□ 1.31
CKS2-201ENST00000314355 CEP164Q9UPV0 1460 aa23.22■■□□□ 1.31
CKS2-201ENST00000314355 CFTRP13569 1480 aa23.21■■□□□ 1.31
CKS2-201ENST00000314355 FANCD2Q9BXW9 1451 aa23.2■■□□□ 1.3
CKS2-201ENST00000314355 WDR62O43379 1518 aa23.1■■□□□ 1.29
CKS2-201ENST00000314355 CCDC88BA6NC98 1476 aa23.07■■□□□ 1.28
CKS2-201ENST00000314355 URB2Q14146 1524 aaKnown RBP22.91■■□□□ 1.26
CKS2-201ENST00000314355 PRDM2Q13029 1718 aa22.88■■□□□ 1.25
CKS2-201ENST00000314355 ABCC8Q09428 1581 aa22.84■■□□□ 1.25
CKS2-201ENST00000314355 SUPT5HO00267 1087 aaKnown RBP22.8■■□□□ 1.24
CKS2-201ENST00000314355 OSCARQ8IYS5 282 aa22.8■■□□□ 1.24
CKS2-201ENST00000314355 IFT140Q96RY7 1462 aa22.76■■□□□ 1.23
CKS2-201ENST00000314355 TOPBP1Q92547 1522 aa22.74■■□□□ 1.23
CKS2-201ENST00000314355 DNMBPQ6XZF7 1577 aa22.67■■□□□ 1.22
CKS2-201ENST00000314355 TRIM41Q8WV44 630 aa22.63■■□□□ 1.21
CKS2-201ENST00000314355 ZNF608Q9ULD9 1512 aaPredicted RBP22.6■■□□□ 1.21
CKS2-201ENST00000314355 SOGA1O94964 1423 aa22.53■■□□□ 1.2
CKS2-201ENST00000314355 POLA1P09884 1462 aaPredicted RBP22.52■■□□□ 1.2
CKS2-201ENST00000314355 FBLN2P98095 1184 aa22.51■■□□□ 1.19
CKS2-201ENST00000314355 AQRO60306 1485 aaKnown RBP eCLIP22.5■■□□□ 1.199e-9■■■■■ 30.5
CKS2-201ENST00000314355 EIF4G3O43432 1585 aaKnown RBP22.46■■□□□ 1.19
CKS2-201ENST00000314355 RAD54L2Q9Y4B4 1467 aa22.45■■□□□ 1.18
CKS2-201ENST00000314355 TARBP1Q13395 1621 aaKnown RBP22.44■■□□□ 1.18
CKS2-201ENST00000314355 TDRD9Q8NDG6 1382 aaKnown RBP22.43■■□□□ 1.18
CKS2-201ENST00000314355 FGD5Q6ZNL6 1462 aa22.42■■□□□ 1.18
CKS2-201ENST00000314355 CUX1P39880 1505 aa22.37■■□□□ 1.17
CKS2-201ENST00000314355 CHMP7Q8WUX9 453 aaPredicted RBP22.37■■□□□ 1.17
CKS2-201ENST00000314355 WDR97A6NE52 1622 aa22.32■■□□□ 1.16
CKS2-201ENST00000314355 GRIN2BQ13224 1484 aa22.28■■□□□ 1.16
CKS2-201ENST00000314355 SNAPC4Q5SXM2 1469 aa22.24■■□□□ 1.15
CKS2-201ENST00000314355 WRNQ14191 1432 aaPredicted RBP eCLIP22.23■■□□□ 1.15
CKS2-201ENST00000314355 CHD1O14646 1710 aa22.23■■□□□ 1.15
CKS2-201ENST00000314355 MAGI1Q96QZ7 1491 aaPredicted RBP22.23■■□□□ 1.15
CKS2-201ENST00000314355 CYB5RLQ6IPT4 315 aa22.23■■□□□ 1.15
CKS2-201ENST00000314355 RIMBP3CA6NJZ7 1639 aa22.23■■□□□ 1.15
CKS2-201ENST00000314355 RIMBP3BA6NNM3 1639 aa22.23■■□□□ 1.15
CKS2-201ENST00000314355 RIMBP3Q9UFD9 1639 aa22.23■■□□□ 1.15
CKS2-201ENST00000314355 GAPVD1Q14C86 1478 aa22.22■■□□□ 1.15
CKS2-201ENST00000314355 ARHGEF11O15085 1522 aa22.22■■□□□ 1.15
CKS2-201ENST00000314355 ABCA10Q8WWZ4 1543 aa22.18■■□□□ 1.14
CKS2-201ENST00000314355 SYNJ2O15056 1496 aa22.15■■□□□ 1.14
CKS2-201ENST00000314355 SYNJ1O43426 1573 aa22.12■■□□□ 1.13
CKS2-201ENST00000314355 TOP2BQ02880 1626 aa22.09■■□□□ 1.13
CKS2-201ENST00000314355 PBRM1Q86U86 1689 aa22.06■■□□□ 1.12
CKS2-201ENST00000314355 BIVM-ERCC5R4GMW8 1640 aa22.06■■□□□ 1.12
CKS2-201ENST00000314355 ABCA5Q8WWZ7 1642 aa22.03■■□□□ 1.12
CKS2-201ENST00000314355 TRHP20396 242 aaPredicted RBP22■■□□□ 1.11
CKS2-201ENST00000314355 CLASP1Q7Z460 1538 aa21.99■■□□□ 1.11
CKS2-201ENST00000314355 ARAP1Q96P48 1450 aa21.97■■□□□ 1.11
CKS2-201ENST00000314355 FHAD1B1AJZ9 1412 aa21.97■■□□□ 1.11
CKS2-201ENST00000314355 GRIN2AQ12879 1464 aa21.94■■□□□ 1.1
CKS2-201ENST00000314355 ERICH3Q5RHP9 1530 aa21.92■■□□□ 1.1
CKS2-201ENST00000314355 ADAMTS12P58397 1594 aa21.87■■□□□ 1.09
CKS2-201ENST00000314355 NUP160Q12769 1436 aa21.83■■□□□ 1.09
CKS2-201ENST00000314355 KIF27Q86VH2 1401 aa21.82■■□□□ 1.08
CKS2-201ENST00000314355 JPH4Q96JJ6 628 aa21.78■■□□□ 1.08
CKS2-201ENST00000314355 CEP170Q5SW79 1584 aa21.77■■□□□ 1.08
CKS2-201ENST00000314355 IGF1RP08069 1367 aa21.74■■□□□ 1.07
CKS2-201ENST00000314355 PRG4Q92954 1404 aaPredicted RBP21.71■■□□□ 1.07
CKS2-201ENST00000314355 NPM1P06748 294 aaKnown RBP eCLIP21.66■■□□□ 1.06
CKS2-201ENST00000314355 CARMIL1Q5VZK9 1371 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms