Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
RFX4Q33E94 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RFX4Q33E94 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFX4Q33E94 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RFX4Q33E94 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
RFX4Q33E94 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
RFX4Q33E94 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
RFX4Q33E94 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFX4Q33E94 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFX4Q33E94 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.73■■□□□ 1.07
RFX4Q33E94 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RFX4Q33E94 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.73■■□□□ 1.07
RFX4Q33E94 AC004812.2-201ENST00000611079 2094 ntBASIC21.73■■□□□ 1.07
RFX4Q33E94 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.73■■□□□ 1.07
RFX4Q33E94 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFX4Q33E94 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.73■■□□□ 1.07
RFX4Q33E94 MIR3648-2-201ENST00000581792 180 ntBASIC21.73■■□□□ 1.07
RFX4Q33E94 MIR3648-1-201ENST00000615959 180 ntBASIC21.73■■□□□ 1.07
RFX4Q33E94 GDI1-215ENST00000630693 786 ntTSL 4 BASIC21.73■■□□□ 1.07
RFX4Q33E94 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RFX4Q33E94 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RFX4Q33E94 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFX4Q33E94 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFX4Q33E94 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RFX4Q33E94 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
RFX4Q33E94 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RFX4Q33E94 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
RFX4Q33E94 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFX4Q33E94 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFX4Q33E94 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFX4Q33E94 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFX4Q33E94 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RFX4Q33E94 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RFX4Q33E94 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RFX4Q33E94 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RFX4Q33E94 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RFX4Q33E94 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RFX4Q33E94 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
RFX4Q33E94 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.71■■□□□ 1.07
RFX4Q33E94 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.71■■□□□ 1.07
RFX4Q33E94 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.7■■□□□ 1.07
RFX4Q33E94 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RFX4Q33E94 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RFX4Q33E94 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.7■■□□□ 1.06
RFX4Q33E94 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.7■■□□□ 1.06
RFX4Q33E94 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
RFX4Q33E94 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RFX4Q33E94 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.69■■□□□ 1.06
RFX4Q33E94 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.69■■□□□ 1.06
RFX4Q33E94 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RFX4Q33E94 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
RFX4Q33E94 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RFX4Q33E94 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RFX4Q33E94 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.68■■□□□ 1.06
RFX4Q33E94 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.68■■□□□ 1.06
RFX4Q33E94 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RFX4Q33E94 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RFX4Q33E94 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
RFX4Q33E94 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.68■■□□□ 1.06
RFX4Q33E94 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.68■■□□□ 1.06
RFX4Q33E94 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.67■■□□□ 1.06
RFX4Q33E94 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.67■■□□□ 1.06
RFX4Q33E94 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
RFX4Q33E94 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.67■■□□□ 1.06
RFX4Q33E94 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFX4Q33E94 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.67■■□□□ 1.06
RFX4Q33E94 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFX4Q33E94 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RFX4Q33E94 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RFX4Q33E94 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RFX4Q33E94 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RFX4Q33E94 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RFX4Q33E94 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFX4Q33E94 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFX4Q33E94 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFX4Q33E94 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RFX4Q33E94 MIR6089-201ENST00000616698 64 ntBASIC21.65■■□□□ 1.06
RFX4Q33E94 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RFX4Q33E94 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFX4Q33E94 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.65■■□□□ 1.06
RFX4Q33E94 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.64■■□□□ 1.06
RFX4Q33E94 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.64■■□□□ 1.06
RFX4Q33E94 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.64■■□□□ 1.05
RFX4Q33E94 AC016575.1-201ENST00000607026 382 ntBASIC21.64■■□□□ 1.05
RFX4Q33E94 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RFX4Q33E94 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.64■■□□□ 1.05
RFX4Q33E94 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX4Q33E94 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
RFX4Q33E94 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX4Q33E94 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RFX4Q33E94 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX4Q33E94 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.63■■□□□ 1.05
RFX4Q33E94 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFX4Q33E94 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.63■■□□□ 1.05
RFX4Q33E94 ABCB10P4-201ENST00000566803 2184 ntBASIC21.63■■□□□ 1.05
RFX4Q33E94 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFX4Q33E94 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
RFX4Q33E94 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFX4Q33E94 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RFX4Q33E94 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms