Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PDLIM4P50479 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PDLIM4P50479 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.89■□□□□ 0.77
PDLIM4P50479 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PDLIM4P50479 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PDLIM4P50479 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
PDLIM4P50479 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
PDLIM4P50479 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
PDLIM4P50479 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.88■□□□□ 0.77
PDLIM4P50479 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM4P50479 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM4P50479 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM4P50479 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.88■□□□□ 0.77
PDLIM4P50479 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM4P50479 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM4P50479 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.88■□□□□ 0.77
PDLIM4P50479 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.88■□□□□ 0.77
PDLIM4P50479 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.88■□□□□ 0.77
PDLIM4P50479 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PDLIM4P50479 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC19.88■□□□□ 0.77
PDLIM4P50479 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM4P50479 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.87■□□□□ 0.77
PDLIM4P50479 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDLIM4P50479 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
PDLIM4P50479 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.87■□□□□ 0.77
PDLIM4P50479 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC19.87■□□□□ 0.77
PDLIM4P50479 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM4P50479 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.86■□□□□ 0.77
PDLIM4P50479 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
PDLIM4P50479 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM4P50479 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM4P50479 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDLIM4P50479 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PDLIM4P50479 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM4P50479 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.85■□□□□ 0.77
PDLIM4P50479 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.85■□□□□ 0.77
PDLIM4P50479 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.85■□□□□ 0.77
PDLIM4P50479 MTDHP2-201ENST00000601468 714 ntBASIC19.85■□□□□ 0.77
PDLIM4P50479 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM4P50479 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDLIM4P50479 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.85■□□□□ 0.77
PDLIM4P50479 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
PDLIM4P50479 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.84■□□□□ 0.77
PDLIM4P50479 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM4P50479 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.84■□□□□ 0.77
PDLIM4P50479 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.84■□□□□ 0.77
PDLIM4P50479 AC010997.5-201ENST00000609182 354 ntBASIC19.84■□□□□ 0.77
PDLIM4P50479 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.84■□□□□ 0.77
PDLIM4P50479 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PDLIM4P50479 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
PDLIM4P50479 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
PDLIM4P50479 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM4P50479 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM4P50479 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM4P50479 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
PDLIM4P50479 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM4P50479 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM4P50479 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PDLIM4P50479 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PDLIM4P50479 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PDLIM4P50479 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM4P50479 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM4P50479 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM4P50479 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.82■□□□□ 0.76
PDLIM4P50479 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.82■□□□□ 0.76
PDLIM4P50479 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.82■□□□□ 0.76
PDLIM4P50479 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PDLIM4P50479 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
PDLIM4P50479 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PDLIM4P50479 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.81■□□□□ 0.76
PDLIM4P50479 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
PDLIM4P50479 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.81■□□□□ 0.76
PDLIM4P50479 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.81■□□□□ 0.76
PDLIM4P50479 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.8■□□□□ 0.76
PDLIM4P50479 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.8■□□□□ 0.76
PDLIM4P50479 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.8■□□□□ 0.76
PDLIM4P50479 FOXO3B-201ENST00000395675 1928 ntBASIC19.8■□□□□ 0.76
PDLIM4P50479 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.8■□□□□ 0.76
PDLIM4P50479 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.79■□□□□ 0.76
PDLIM4P50479 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PDLIM4P50479 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.79■□□□□ 0.76
PDLIM4P50479 MIR6724-1-201ENST00000616420 92 ntBASIC19.79■□□□□ 0.76
PDLIM4P50479 MIR6724-2-201ENST00000616483 92 ntBASIC19.79■□□□□ 0.76
PDLIM4P50479 MIR6724-4-201ENST00000617390 92 ntBASIC19.79■□□□□ 0.76
PDLIM4P50479 MIR6724-3-201ENST00000622482 92 ntBASIC19.79■□□□□ 0.76
PDLIM4P50479 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PDLIM4P50479 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PDLIM4P50479 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PDLIM4P50479 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
PDLIM4P50479 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM4P50479 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PDLIM4P50479 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM4P50479 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PDLIM4P50479 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PDLIM4P50479 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
PDLIM4P50479 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.78■□□□□ 0.76
PDLIM4P50479 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.78■□□□□ 0.76
PDLIM4P50479 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.78■□□□□ 0.76
PDLIM4P50479 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.78■□□□□ 0.76
PDLIM4P50479 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms