Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
HNF4AP41235 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
HNF4AP41235 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
HNF4AP41235 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
HNF4AP41235 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.69■■□□□ 1.22
HNF4AP41235 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.69■■□□□ 1.22
HNF4AP41235 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
HNF4AP41235 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
HNF4AP41235 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HNF4AP41235 BHLHE23-202ENST00000612929 1109 ntBASIC22.68■■□□□ 1.22
HNF4AP41235 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HNF4AP41235 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
HNF4AP41235 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC22.67■■□□□ 1.22
HNF4AP41235 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.67■■□□□ 1.22
HNF4AP41235 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
HNF4AP41235 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
HNF4AP41235 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.67■■□□□ 1.22
HNF4AP41235 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HNF4AP41235 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HNF4AP41235 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HNF4AP41235 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HNF4AP41235 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
HNF4AP41235 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.67■■□□□ 1.22
HNF4AP41235 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.66■■□□□ 1.22
HNF4AP41235 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HNF4AP41235 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
HNF4AP41235 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
HNF4AP41235 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HNF4AP41235 AC139795.1-202ENST00000500444 432 ntBASIC22.66■■□□□ 1.22
HNF4AP41235 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
HNF4AP41235 AC087393.1-201ENST00000582896 145 ntBASIC22.66■■□□□ 1.22
HNF4AP41235 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.66■■□□□ 1.22
HNF4AP41235 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.65■■□□□ 1.22
HNF4AP41235 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HNF4AP41235 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.65■■□□□ 1.22
HNF4AP41235 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HNF4AP41235 GUK1-208ENST00000366728 842 ntTSL 2 BASIC22.65■■□□□ 1.22
HNF4AP41235 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC22.65■■□□□ 1.22
HNF4AP41235 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HNF4AP41235 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HNF4AP41235 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HNF4AP41235 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HNF4AP41235 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.64■■□□□ 1.22
HNF4AP41235 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
HNF4AP41235 AC093323.1-202ENST00000635031 2045 ntBASIC22.64■■□□□ 1.22
HNF4AP41235 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.64■■□□□ 1.22
HNF4AP41235 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HNF4AP41235 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HNF4AP41235 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
HNF4AP41235 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
HNF4AP41235 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.64■■□□□ 1.21
HNF4AP41235 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
HNF4AP41235 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
HNF4AP41235 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
HNF4AP41235 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HNF4AP41235 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.63■■□□□ 1.21
HNF4AP41235 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HNF4AP41235 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.63■■□□□ 1.21
HNF4AP41235 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
HNF4AP41235 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HNF4AP41235 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HNF4AP41235 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HNF4AP41235 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HNF4AP41235 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
HNF4AP41235 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HNF4AP41235 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.62■■□□□ 1.21
HNF4AP41235 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
HNF4AP41235 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
HNF4AP41235 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.62■■□□□ 1.21
HNF4AP41235 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
HNF4AP41235 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HNF4AP41235 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HNF4AP41235 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HNF4AP41235 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
HNF4AP41235 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
HNF4AP41235 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HNF4AP41235 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
HNF4AP41235 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.61■■□□□ 1.21
HNF4AP41235 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.61■■□□□ 1.21
HNF4AP41235 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.61■■□□□ 1.21
HNF4AP41235 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.6■■□□□ 1.21
HNF4AP41235 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HNF4AP41235 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HNF4AP41235 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HNF4AP41235 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
HNF4AP41235 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HNF4AP41235 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.59■■□□□ 1.21
HNF4AP41235 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HNF4AP41235 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HNF4AP41235 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HNF4AP41235 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.58■■□□□ 1.21
HNF4AP41235 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.58■■□□□ 1.21
HNF4AP41235 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC22.58■■□□□ 1.21
HNF4AP41235 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC22.58■■□□□ 1.21
HNF4AP41235 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
HNF4AP41235 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.2
HNF4AP41235 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HNF4AP41235 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HNF4AP41235 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HNF4AP41235 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms