Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQA1P01909 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQA1P01909 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DQA1P01909 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DQA1P01909 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 LINC00273-201ENST00000539813 1452 ntBASIC17.56■□□□□ 0.4
HLA-DQA1P01909 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DQA1P01909 EP400NL-214ENST00000641289 2402 ntBASIC17.56■□□□□ 0.4
HLA-DQA1P01909 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DQA1P01909 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HLA-DQA1P01909 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQA1P01909 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HLA-DQA1P01909 SLC6A10P-202ENST00000431994 2058 ntBASIC17.52■□□□□ 0.39
HLA-DQA1P01909 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HLA-DQA1P01909 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
HLA-DQA1P01909 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQA1P01909 AC137767.1-201ENST00000602918 1920 ntBASIC17.51■□□□□ 0.39
HLA-DQA1P01909 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HLA-DQA1P01909 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms