Protein–RNA interactions for Protein: O60287

URB1, Nucleolar pre-ribosomal-associated protein 1, humanhuman

Known RBP Predictions only

Length 2,271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
URB1O60287 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
URB1O60287 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
URB1O60287 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.25■■□□□ 1.15
URB1O60287 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC22.25■■□□□ 1.15
URB1O60287 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.24■■□□□ 1.15
URB1O60287 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.24■■□□□ 1.15
URB1O60287 STOX2-205ENST00000513034 807 ntTSL 3 BASIC22.24■■□□□ 1.15
URB1O60287 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC22.24■■□□□ 1.15
URB1O60287 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
URB1O60287 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
URB1O60287 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
URB1O60287 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
URB1O60287 BX255925.1-201ENST00000566954 1854 ntBASIC22.24■■□□□ 1.15
URB1O60287 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
URB1O60287 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.23■■□□□ 1.15
URB1O60287 AC034268.1-201ENST00000441047 882 ntBASIC22.23■■□□□ 1.15
URB1O60287 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC22.23■■□□□ 1.15
URB1O60287 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.23■■□□□ 1.15
URB1O60287 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.23■■□□□ 1.15
URB1O60287 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
URB1O60287 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
URB1O60287 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
URB1O60287 AL449106.1-201ENST00000608517 1980 ntBASIC22.23■■□□□ 1.15
URB1O60287 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.23■■□□□ 1.15
URB1O60287 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.23■■□□□ 1.15
URB1O60287 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
URB1O60287 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
URB1O60287 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC22.22■■□□□ 1.15
URB1O60287 CLTA-206ENST00000466396 695 ntTSL 2 BASIC22.22■■□□□ 1.15
URB1O60287 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.22■■□□□ 1.15
URB1O60287 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
URB1O60287 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
URB1O60287 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
URB1O60287 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
URB1O60287 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
URB1O60287 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
URB1O60287 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
URB1O60287 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
URB1O60287 LINC01003-201ENST00000564834 1764 ntBASIC22.21■■□□□ 1.15
URB1O60287 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC22.2■■□□□ 1.15
URB1O60287 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
URB1O60287 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC22.2■■□□□ 1.14
URB1O60287 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
URB1O60287 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
URB1O60287 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
URB1O60287 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.19■■□□□ 1.14
URB1O60287 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.19■■□□□ 1.14
URB1O60287 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.19■■□□□ 1.14
URB1O60287 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
URB1O60287 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.19■■□□□ 1.14
URB1O60287 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC22.19■■□□□ 1.14
URB1O60287 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.19■■□□□ 1.14
URB1O60287 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
URB1O60287 RASA4CP-201ENST00000424092 1398 ntBASIC22.19■■□□□ 1.14
URB1O60287 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
URB1O60287 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
URB1O60287 AC091305.1-201ENST00000479476 895 ntBASIC22.18■■□□□ 1.14
URB1O60287 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
URB1O60287 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
URB1O60287 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
URB1O60287 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.18■■□□□ 1.14
URB1O60287 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
URB1O60287 IKBKGP1-201ENST00000612193 1073 ntBASIC22.17■■□□□ 1.14
URB1O60287 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.17■■□□□ 1.14
URB1O60287 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
URB1O60287 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
URB1O60287 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
URB1O60287 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
URB1O60287 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
URB1O60287 SNX5-217ENST00000606557 1087 ntBASIC22.17■■□□□ 1.14
URB1O60287 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
URB1O60287 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.17■■□□□ 1.14
URB1O60287 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
URB1O60287 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
URB1O60287 DRD5P2-201ENST00000421395 2012 ntBASIC22.16■■□□□ 1.14
URB1O60287 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
URB1O60287 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
URB1O60287 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
URB1O60287 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
URB1O60287 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
URB1O60287 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.15■■□□□ 1.14
URB1O60287 DUX4L19-201ENST00000557448 1267 ntBASIC22.15■■□□□ 1.14
URB1O60287 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.15■■□□□ 1.14
URB1O60287 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
URB1O60287 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
URB1O60287 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
URB1O60287 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
URB1O60287 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC22.14■■□□□ 1.14
URB1O60287 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
URB1O60287 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
URB1O60287 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.14■■□□□ 1.13
URB1O60287 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
URB1O60287 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
URB1O60287 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.14■■□□□ 1.13
URB1O60287 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
URB1O60287 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
URB1O60287 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
URB1O60287 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.13■■□□□ 1.13
URB1O60287 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC22.13■■□□□ 1.13
URB1O60287 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms