Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC37.61■■■■□ 3.61
USP42Q9H9J4 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC37.6■■■■□ 3.61
USP42Q9H9J4 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC37.6■■■■□ 3.61
USP42Q9H9J4 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC37.56■■■■□ 3.6
USP42Q9H9J4 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
USP42Q9H9J4 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC37.54■■■■□ 3.6
USP42Q9H9J4 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC37.53■■■■□ 3.6
USP42Q9H9J4 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC37.52■■■■□ 3.6
USP42Q9H9J4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC37.49■■■■□ 3.59
USP42Q9H9J4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC37.48■■■■□ 3.59
USP42Q9H9J4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC37.48■■■■□ 3.59
USP42Q9H9J4 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC37.46■■■■□ 3.59
USP42Q9H9J4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC37.45■■■■□ 3.59
USP42Q9H9J4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC37.43■■■■□ 3.58
USP42Q9H9J4 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC37.43■■■■□ 3.58
USP42Q9H9J4 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
USP42Q9H9J4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC37.39■■■■□ 3.58
USP42Q9H9J4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
USP42Q9H9J4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC37.36■■■■□ 3.57
USP42Q9H9J4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC37.36■■■■□ 3.57
USP42Q9H9J4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC37.35■■■■□ 3.57
USP42Q9H9J4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC37.32■■■■□ 3.56
USP42Q9H9J4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC37.26■■■■□ 3.56
USP42Q9H9J4 RARRES2P7-201ENST00000567349 469 ntBASIC37.24■■■■□ 3.55
USP42Q9H9J4 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC37.24■■■■□ 3.55
USP42Q9H9J4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC37.18■■■■□ 3.54
USP42Q9H9J4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC37.15■■■■□ 3.54
USP42Q9H9J4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC37.14■■■■□ 3.54
USP42Q9H9J4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC37.12■■■■□ 3.53
USP42Q9H9J4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
USP42Q9H9J4 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC37.02■■■■□ 3.52
USP42Q9H9J4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC36.99■■■■□ 3.51
USP42Q9H9J4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC36.99■■■■□ 3.51
USP42Q9H9J4 AC097358.2-201ENST00000607541 1159 ntBASIC36.99■■■■□ 3.51
USP42Q9H9J4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC36.98■■■■□ 3.51
USP42Q9H9J4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC36.97■■■■□ 3.51
USP42Q9H9J4 AC136428.2-201ENST00000563187 214 ntBASIC36.96■■■■□ 3.51
USP42Q9H9J4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC36.96■■■■□ 3.51
USP42Q9H9J4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
USP42Q9H9J4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
USP42Q9H9J4 SETD8P1-201ENST00000623146 1180 ntBASIC36.89■■■■□ 3.5
USP42Q9H9J4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC36.88■■■■□ 3.49
USP42Q9H9J4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.49
USP42Q9H9J4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC36.85■■■■□ 3.49
USP42Q9H9J4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC36.85■■■■□ 3.49
USP42Q9H9J4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC36.85■■■■□ 3.49
USP42Q9H9J4 SUZ12P1-203ENST00000578195 985 ntBASIC36.83■■■■□ 3.49
USP42Q9H9J4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC36.79■■■■□ 3.48
USP42Q9H9J4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC36.76■■■■□ 3.47
USP42Q9H9J4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC36.75■■■■□ 3.47
USP42Q9H9J4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC36.72■■■■□ 3.47
USP42Q9H9J4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
USP42Q9H9J4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC36.71■■■■□ 3.47
USP42Q9H9J4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC36.7■■■■□ 3.47
USP42Q9H9J4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC36.69■■■■□ 3.46
USP42Q9H9J4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC36.68■■■■□ 3.46
USP42Q9H9J4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC36.67■■■■□ 3.46
USP42Q9H9J4 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC36.67■■■■□ 3.46
USP42Q9H9J4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC36.65■■■■□ 3.46
USP42Q9H9J4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC36.64■■■■□ 3.46
USP42Q9H9J4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC36.64■■■■□ 3.46
USP42Q9H9J4 RPS2P35-201ENST00000443417 897 ntBASIC36.63■■■■□ 3.45
USP42Q9H9J4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC36.63■■■■□ 3.45
USP42Q9H9J4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC36.62■■■■□ 3.45
USP42Q9H9J4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC36.55■■■■□ 3.44
USP42Q9H9J4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC36.55■■■■□ 3.44
USP42Q9H9J4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC36.54■■■■□ 3.44
USP42Q9H9J4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC36.52■■■■□ 3.44
USP42Q9H9J4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC36.49■■■■□ 3.43
USP42Q9H9J4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC36.49■■■■□ 3.43
USP42Q9H9J4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC36.45■■■■□ 3.43
USP42Q9H9J4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC36.44■■■■□ 3.42
USP42Q9H9J4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
USP42Q9H9J4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC36.41■■■■□ 3.42
USP42Q9H9J4 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC36.4■■■■□ 3.42
USP42Q9H9J4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC36.39■■■■□ 3.42
USP42Q9H9J4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC36.36■■■■□ 3.41
USP42Q9H9J4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC36.32■■■■□ 3.41
USP42Q9H9J4 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC36.32■■■■□ 3.4
USP42Q9H9J4 CAHM-201ENST00000604200 896 ntBASIC36.3■■■■□ 3.4
USP42Q9H9J4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC36.29■■■■□ 3.4
USP42Q9H9J4 AC145285.7-201ENST00000614819 1539 ntBASIC36.28■■■■□ 3.4
USP42Q9H9J4 MVK-208ENST00000539696 608 ntTSL 5 BASIC36.26■■■■□ 3.39
USP42Q9H9J4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC36.24■■■■□ 3.39
USP42Q9H9J4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC36.23■■■■□ 3.39
USP42Q9H9J4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
USP42Q9H9J4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC36.23■■■■□ 3.39
USP42Q9H9J4 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC36.22■■■■□ 3.39
USP42Q9H9J4 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC36.22■■■■□ 3.39
USP42Q9H9J4 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
USP42Q9H9J4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC36.18■■■■□ 3.38
USP42Q9H9J4 AL162393.1-201ENST00000437852 946 ntBASIC36.18■■■■□ 3.38
USP42Q9H9J4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC36.17■■■■□ 3.38
USP42Q9H9J4 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC36.16■■■■□ 3.38
USP42Q9H9J4 NRG1-221ENST00000614767 762 ntTSL 5 BASIC36.14■■■■□ 3.38
USP42Q9H9J4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC36.13■■■■□ 3.37
USP42Q9H9J4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC36.12■■■■□ 3.37
USP42Q9H9J4 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
USP42Q9H9J4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
USP42Q9H9J4 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC36.1■■■■□ 3.37
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms