Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
VPS13AQ96RL7 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
VPS13AQ96RL7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
VPS13AQ96RL7 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
VPS13AQ96RL7 SUZ12P1-203ENST00000578195 985 ntBASIC29.91■■■□□ 2.38
VPS13AQ96RL7 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.86■■■□□ 2.37
VPS13AQ96RL7 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
VPS13AQ96RL7 AL031258.1-201ENST00000623562 325 ntBASIC29.83■■■□□ 2.37
VPS13AQ96RL7 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
VPS13AQ96RL7 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
VPS13AQ96RL7 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
VPS13AQ96RL7 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
VPS13AQ96RL7 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
VPS13AQ96RL7 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC29.74■■■□□ 2.35
VPS13AQ96RL7 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
VPS13AQ96RL7 AC097358.2-201ENST00000607541 1159 ntBASIC29.68■■■□□ 2.34
VPS13AQ96RL7 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
VPS13AQ96RL7 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
VPS13AQ96RL7 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC29.65■■■□□ 2.34
VPS13AQ96RL7 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.62■■■□□ 2.33
VPS13AQ96RL7 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.6■■■□□ 2.33
VPS13AQ96RL7 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
VPS13AQ96RL7 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
VPS13AQ96RL7 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.57■■■□□ 2.32
VPS13AQ96RL7 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.54■■■□□ 2.32
VPS13AQ96RL7 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.54■■■□□ 2.32
VPS13AQ96RL7 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC29.52■■■□□ 2.32
VPS13AQ96RL7 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
VPS13AQ96RL7 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.5■■■□□ 2.31
VPS13AQ96RL7 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.48■■■□□ 2.31
VPS13AQ96RL7 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC29.47■■■□□ 2.31
VPS13AQ96RL7 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.46■■■□□ 2.31
VPS13AQ96RL7 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
VPS13AQ96RL7 SETD8P1-201ENST00000623146 1180 ntBASIC29.42■■■□□ 2.3
VPS13AQ96RL7 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.41■■■□□ 2.3
VPS13AQ96RL7 AL162393.1-201ENST00000437852 946 ntBASIC29.41■■■□□ 2.3
VPS13AQ96RL7 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC29.37■■■□□ 2.29
VPS13AQ96RL7 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
VPS13AQ96RL7 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.34■■■□□ 2.29
VPS13AQ96RL7 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.34■■■□□ 2.29
VPS13AQ96RL7 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
VPS13AQ96RL7 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.32■■■□□ 2.28
VPS13AQ96RL7 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.31■■■□□ 2.28
VPS13AQ96RL7 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
VPS13AQ96RL7 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29.25■■■□□ 2.27
VPS13AQ96RL7 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC29.24■■■□□ 2.27
VPS13AQ96RL7 EBPL-203ENST00000378270 579 ntTSL 2 BASIC29.22■■■□□ 2.27
VPS13AQ96RL7 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.21■■■□□ 2.27
VPS13AQ96RL7 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.21■■■□□ 2.27
VPS13AQ96RL7 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.2■■■□□ 2.27
VPS13AQ96RL7 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
VPS13AQ96RL7 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.17■■■□□ 2.26
VPS13AQ96RL7 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.16■■■□□ 2.26
VPS13AQ96RL7 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
VPS13AQ96RL7 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.15■■■□□ 2.26
VPS13AQ96RL7 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.08■■■□□ 2.25
VPS13AQ96RL7 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
VPS13AQ96RL7 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
VPS13AQ96RL7 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
VPS13AQ96RL7 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
VPS13AQ96RL7 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
VPS13AQ96RL7 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
VPS13AQ96RL7 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
VPS13AQ96RL7 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
VPS13AQ96RL7 HLA-V-202ENST00000446817 847 ntBASIC28.99■■■□□ 2.23
VPS13AQ96RL7 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
VPS13AQ96RL7 MIR7108-201ENST00000614319 87 ntBASIC28.97■■■□□ 2.23
VPS13AQ96RL7 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.93■■■□□ 2.22
VPS13AQ96RL7 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
VPS13AQ96RL7 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC28.92■■■□□ 2.22
VPS13AQ96RL7 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.92■■■□□ 2.22
VPS13AQ96RL7 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
VPS13AQ96RL7 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
VPS13AQ96RL7 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.91■■■□□ 2.22
VPS13AQ96RL7 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.22
VPS13AQ96RL7 ABHD17AP4-201ENST00000411545 909 ntBASIC28.89■■■□□ 2.22
VPS13AQ96RL7 CAHM-201ENST00000604200 896 ntBASIC28.89■■■□□ 2.22
VPS13AQ96RL7 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
VPS13AQ96RL7 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
VPS13AQ96RL7 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.87■■■□□ 2.21
VPS13AQ96RL7 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
VPS13AQ96RL7 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC28.85■■■□□ 2.21
VPS13AQ96RL7 AP006261.1-201ENST00000584783 668 ntBASIC28.85■■■□□ 2.21
VPS13AQ96RL7 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
VPS13AQ96RL7 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC28.8■■■□□ 2.2
VPS13AQ96RL7 AL391121.1-201ENST00000607967 1349 ntBASIC28.77■■■□□ 2.2
VPS13AQ96RL7 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
VPS13AQ96RL7 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
VPS13AQ96RL7 MBP-237ENST00000579129 1052 ntTSL 5 BASIC28.74■■■□□ 2.19
VPS13AQ96RL7 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
VPS13AQ96RL7 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.73■■■□□ 2.19
VPS13AQ96RL7 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.71■■■□□ 2.19
VPS13AQ96RL7 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
VPS13AQ96RL7 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.7■■■□□ 2.19
VPS13AQ96RL7 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.69■■■□□ 2.18
VPS13AQ96RL7 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.68■■■□□ 2.18
VPS13AQ96RL7 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC28.66■■■□□ 2.18
VPS13AQ96RL7 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.65■■■□□ 2.18
VPS13AQ96RL7 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.64■■■□□ 2.17
VPS13AQ96RL7 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms