Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
LRCH3Q96II8 AC097358.2-201ENST00000607541 1159 ntBASIC32.6■■■□□ 2.81
LRCH3Q96II8 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC32.55■■■□□ 2.8
LRCH3Q96II8 SUZ12P1-203ENST00000578195 985 ntBASIC32.5■■■□□ 2.79
LRCH3Q96II8 AC136428.2-201ENST00000563187 214 ntBASIC32.45■■■□□ 2.79
LRCH3Q96II8 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
LRCH3Q96II8 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
LRCH3Q96II8 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
LRCH3Q96II8 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC32.43■■■□□ 2.78
LRCH3Q96II8 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC32.39■■■□□ 2.78
LRCH3Q96II8 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
LRCH3Q96II8 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
LRCH3Q96II8 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
LRCH3Q96II8 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.3■■■□□ 2.76
LRCH3Q96II8 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
LRCH3Q96II8 SETD8P1-201ENST00000623146 1180 ntBASIC32.26■■■□□ 2.75
LRCH3Q96II8 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.26■■■□□ 2.75
LRCH3Q96II8 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
LRCH3Q96II8 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32.24■■■□□ 2.75
LRCH3Q96II8 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC32.21■■■□□ 2.75
LRCH3Q96II8 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
LRCH3Q96II8 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
LRCH3Q96II8 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.17■■■□□ 2.74
LRCH3Q96II8 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
LRCH3Q96II8 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC32.14■■■□□ 2.74
LRCH3Q96II8 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC32.08■■■□□ 2.73
LRCH3Q96II8 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC32.08■■■□□ 2.73
LRCH3Q96II8 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC32.07■■■□□ 2.72
LRCH3Q96II8 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC32.04■■■□□ 2.72
LRCH3Q96II8 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC32.04■■■□□ 2.72
LRCH3Q96II8 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
LRCH3Q96II8 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC32■■■□□ 2.71
LRCH3Q96II8 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32■■■□□ 2.71
LRCH3Q96II8 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
LRCH3Q96II8 AL162393.1-201ENST00000437852 946 ntBASIC31.99■■■□□ 2.71
LRCH3Q96II8 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.99■■■□□ 2.71
LRCH3Q96II8 MIR7108-201ENST00000614319 87 ntBASIC31.98■■■□□ 2.71
LRCH3Q96II8 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.94■■■□□ 2.7
LRCH3Q96II8 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
LRCH3Q96II8 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.91■■■□□ 2.7
LRCH3Q96II8 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
LRCH3Q96II8 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.89■■■□□ 2.7
LRCH3Q96II8 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.88■■■□□ 2.69
LRCH3Q96II8 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.88■■■□□ 2.69
LRCH3Q96II8 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
LRCH3Q96II8 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.87■■■□□ 2.69
LRCH3Q96II8 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
LRCH3Q96II8 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
LRCH3Q96II8 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
LRCH3Q96II8 ABHD17AP4-201ENST00000411545 909 ntBASIC31.81■■■□□ 2.68
LRCH3Q96II8 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.8■■■□□ 2.68
LRCH3Q96II8 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.79■■■□□ 2.68
LRCH3Q96II8 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC31.78■■■□□ 2.68
LRCH3Q96II8 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.76■■■□□ 2.67
LRCH3Q96II8 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
LRCH3Q96II8 HLA-V-202ENST00000446817 847 ntBASIC31.75■■■□□ 2.67
LRCH3Q96II8 AP006261.1-201ENST00000584783 668 ntBASIC31.7■■■□□ 2.67
LRCH3Q96II8 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
LRCH3Q96II8 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.67■■■□□ 2.66
LRCH3Q96II8 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.67■■■□□ 2.66
LRCH3Q96II8 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
LRCH3Q96II8 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.65■■■□□ 2.66
LRCH3Q96II8 CAHM-201ENST00000604200 896 ntBASIC31.61■■■□□ 2.65
LRCH3Q96II8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
LRCH3Q96II8 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
LRCH3Q96II8 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.58■■■□□ 2.65
LRCH3Q96II8 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
LRCH3Q96II8 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.54■■■□□ 2.64
LRCH3Q96II8 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
LRCH3Q96II8 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
LRCH3Q96II8 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
LRCH3Q96II8 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
LRCH3Q96II8 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
LRCH3Q96II8 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
LRCH3Q96II8 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.47■■■□□ 2.63
LRCH3Q96II8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.45■■■□□ 2.63
LRCH3Q96II8 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.44■■■□□ 2.62
LRCH3Q96II8 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.42■■■□□ 2.62
LRCH3Q96II8 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
LRCH3Q96II8 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.41■■■□□ 2.62
LRCH3Q96II8 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
LRCH3Q96II8 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
LRCH3Q96II8 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.38■■■□□ 2.61
LRCH3Q96II8 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
LRCH3Q96II8 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.36■■■□□ 2.61
LRCH3Q96II8 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
LRCH3Q96II8 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
LRCH3Q96II8 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
LRCH3Q96II8 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.31■■■□□ 2.6
LRCH3Q96II8 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.31■■■□□ 2.6
LRCH3Q96II8 AL391121.1-201ENST00000607967 1349 ntBASIC31.3■■■□□ 2.6
LRCH3Q96II8 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
LRCH3Q96II8 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
LRCH3Q96II8 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
LRCH3Q96II8 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.23■■■□□ 2.59
LRCH3Q96II8 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.23■■■□□ 2.59
LRCH3Q96II8 MIR3665-201ENST00000578708 105 ntBASIC31.21■■■□□ 2.59
LRCH3Q96II8 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.2■■■□□ 2.59
LRCH3Q96II8 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.2■■■□□ 2.59
LRCH3Q96II8 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.19■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms