Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.74■■□□□ 1.87
RPUSD3Q6P087 AL031258.1-201ENST00000623562 325 ntBASIC26.72■■□□□ 1.87
RPUSD3Q6P087 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC26.7■■□□□ 1.87
RPUSD3Q6P087 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
RPUSD3Q6P087 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
RPUSD3Q6P087 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
RPUSD3Q6P087 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
RPUSD3Q6P087 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
RPUSD3Q6P087 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.57■■□□□ 1.84
RPUSD3Q6P087 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
RPUSD3Q6P087 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
RPUSD3Q6P087 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
RPUSD3Q6P087 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.54■■□□□ 1.84
RPUSD3Q6P087 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.54■■□□□ 1.84
RPUSD3Q6P087 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.51■■□□□ 1.83
RPUSD3Q6P087 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.48■■□□□ 1.83
RPUSD3Q6P087 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
RPUSD3Q6P087 ILK-212ENST00000532063 1617 ntTSL 2 BASIC26.47■■□□□ 1.83
RPUSD3Q6P087 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
RPUSD3Q6P087 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
RPUSD3Q6P087 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RPUSD3Q6P087 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
RPUSD3Q6P087 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.37■■□□□ 1.81
RPUSD3Q6P087 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RPUSD3Q6P087 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RPUSD3Q6P087 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.32■■□□□ 1.8
RPUSD3Q6P087 RARRES2P7-201ENST00000567349 469 ntBASIC26.31■■□□□ 1.8
RPUSD3Q6P087 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
RPUSD3Q6P087 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RPUSD3Q6P087 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.3■■□□□ 1.8
RPUSD3Q6P087 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
RPUSD3Q6P087 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.28■■□□□ 1.8
RPUSD3Q6P087 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
RPUSD3Q6P087 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
RPUSD3Q6P087 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RPUSD3Q6P087 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RPUSD3Q6P087 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.25■■□□□ 1.79
RPUSD3Q6P087 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
RPUSD3Q6P087 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
RPUSD3Q6P087 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.24■■□□□ 1.79
RPUSD3Q6P087 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.23■■□□□ 1.79
RPUSD3Q6P087 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.23■■□□□ 1.79
RPUSD3Q6P087 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.22■■□□□ 1.79
RPUSD3Q6P087 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC26.18■■□□□ 1.78
RPUSD3Q6P087 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.17■■□□□ 1.78
RPUSD3Q6P087 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
RPUSD3Q6P087 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.16■■□□□ 1.78
RPUSD3Q6P087 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
RPUSD3Q6P087 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.1■■□□□ 1.77
RPUSD3Q6P087 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
RPUSD3Q6P087 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.09■■□□□ 1.77
RPUSD3Q6P087 AC097358.2-201ENST00000607541 1159 ntBASIC26.09■■□□□ 1.77
RPUSD3Q6P087 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.09■■□□□ 1.77
RPUSD3Q6P087 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
RPUSD3Q6P087 SETD8P1-201ENST00000623146 1180 ntBASIC26.07■■□□□ 1.76
RPUSD3Q6P087 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.03■■□□□ 1.76
RPUSD3Q6P087 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RPUSD3Q6P087 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.02■■□□□ 1.76
RPUSD3Q6P087 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RPUSD3Q6P087 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.01■■□□□ 1.75
RPUSD3Q6P087 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC26■■□□□ 1.75
RPUSD3Q6P087 AC136428.2-201ENST00000563187 214 ntBASIC26■■□□□ 1.75
RPUSD3Q6P087 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
RPUSD3Q6P087 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.95■■□□□ 1.74
RPUSD3Q6P087 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
RPUSD3Q6P087 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
RPUSD3Q6P087 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
RPUSD3Q6P087 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.89■■□□□ 1.74
RPUSD3Q6P087 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
RPUSD3Q6P087 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
RPUSD3Q6P087 SUZ12P1-203ENST00000578195 985 ntBASIC25.88■■□□□ 1.73
RPUSD3Q6P087 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.86■■□□□ 1.73
RPUSD3Q6P087 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
RPUSD3Q6P087 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC25.84■■□□□ 1.73
RPUSD3Q6P087 AC145285.7-201ENST00000614819 1539 ntBASIC25.83■■□□□ 1.73
RPUSD3Q6P087 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RPUSD3Q6P087 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.82■■□□□ 1.72
RPUSD3Q6P087 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC25.81■■□□□ 1.72
RPUSD3Q6P087 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
RPUSD3Q6P087 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
RPUSD3Q6P087 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC25.77■■□□□ 1.72
RPUSD3Q6P087 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
RPUSD3Q6P087 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
RPUSD3Q6P087 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
RPUSD3Q6P087 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
RPUSD3Q6P087 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
RPUSD3Q6P087 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
RPUSD3Q6P087 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.71■■□□□ 1.71
RPUSD3Q6P087 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC25.69■■□□□ 1.7
RPUSD3Q6P087 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
RPUSD3Q6P087 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
RPUSD3Q6P087 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC25.68■■□□□ 1.7
RPUSD3Q6P087 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC25.67■■□□□ 1.7
RPUSD3Q6P087 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RPUSD3Q6P087 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RPUSD3Q6P087 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RPUSD3Q6P087 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
RPUSD3Q6P087 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RPUSD3Q6P087 RPS2P35-201ENST00000443417 897 ntBASIC25.63■■□□□ 1.69
RPUSD3Q6P087 CAHM-201ENST00000604200 896 ntBASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms