Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CTC1Q2NKJ3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.39■■■□□ 2.62
CTC1Q2NKJ3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.39■■■□□ 2.62
CTC1Q2NKJ3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.39■■■□□ 2.62
CTC1Q2NKJ3 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.37■■■□□ 2.61
CTC1Q2NKJ3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.37■■■□□ 2.61
CTC1Q2NKJ3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CTC1Q2NKJ3 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CTC1Q2NKJ3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.36■■■□□ 2.61
CTC1Q2NKJ3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.34■■■□□ 2.61
CTC1Q2NKJ3 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.33■■■□□ 2.61
CTC1Q2NKJ3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.33■■■□□ 2.61
CTC1Q2NKJ3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
CTC1Q2NKJ3 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CTC1Q2NKJ3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.25■■■□□ 2.59
CTC1Q2NKJ3 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.22■■■□□ 2.59
CTC1Q2NKJ3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.21■■■□□ 2.59
CTC1Q2NKJ3 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
CTC1Q2NKJ3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.19■■■□□ 2.58
CTC1Q2NKJ3 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.19■■■□□ 2.58
CTC1Q2NKJ3 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
CTC1Q2NKJ3 RARRES2P7-201ENST00000567349 469 ntBASIC31.17■■■□□ 2.58
CTC1Q2NKJ3 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CTC1Q2NKJ3 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
CTC1Q2NKJ3 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.1■■■□□ 2.57
CTC1Q2NKJ3 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CTC1Q2NKJ3 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
CTC1Q2NKJ3 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CTC1Q2NKJ3 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.56
CTC1Q2NKJ3 AC097358.2-201ENST00000607541 1159 ntBASIC31■■■□□ 2.55
CTC1Q2NKJ3 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.98■■■□□ 2.55
CTC1Q2NKJ3 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.94■■■□□ 2.54
CTC1Q2NKJ3 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.93■■■□□ 2.54
CTC1Q2NKJ3 AC136428.2-201ENST00000563187 214 ntBASIC30.93■■■□□ 2.54
CTC1Q2NKJ3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.92■■■□□ 2.54
CTC1Q2NKJ3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.53
CTC1Q2NKJ3 SUZ12P1-203ENST00000578195 985 ntBASIC30.86■■■□□ 2.53
CTC1Q2NKJ3 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CTC1Q2NKJ3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.84■■■□□ 2.53
CTC1Q2NKJ3 SETD8P1-201ENST00000623146 1180 ntBASIC30.84■■■□□ 2.53
CTC1Q2NKJ3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CTC1Q2NKJ3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.83■■■□□ 2.53
CTC1Q2NKJ3 RPS2P35-201ENST00000443417 897 ntBASIC30.82■■■□□ 2.52
CTC1Q2NKJ3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CTC1Q2NKJ3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CTC1Q2NKJ3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.8■■■□□ 2.52
CTC1Q2NKJ3 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CTC1Q2NKJ3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.72■■■□□ 2.51
CTC1Q2NKJ3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.71■■■□□ 2.51
CTC1Q2NKJ3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CTC1Q2NKJ3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.68■■■□□ 2.5
CTC1Q2NKJ3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.68■■■□□ 2.5
CTC1Q2NKJ3 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
CTC1Q2NKJ3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.65■■■□□ 2.5
CTC1Q2NKJ3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CTC1Q2NKJ3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.64■■■□□ 2.5
CTC1Q2NKJ3 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CTC1Q2NKJ3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CTC1Q2NKJ3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
CTC1Q2NKJ3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CTC1Q2NKJ3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CTC1Q2NKJ3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.58■■■□□ 2.49
CTC1Q2NKJ3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.58■■■□□ 2.49
CTC1Q2NKJ3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
CTC1Q2NKJ3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.54■■■□□ 2.48
CTC1Q2NKJ3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.53■■■□□ 2.48
CTC1Q2NKJ3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CTC1Q2NKJ3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.49■■■□□ 2.47
CTC1Q2NKJ3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.47
CTC1Q2NKJ3 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CTC1Q2NKJ3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CTC1Q2NKJ3 CAHM-201ENST00000604200 896 ntBASIC30.35■■■□□ 2.45
CTC1Q2NKJ3 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CTC1Q2NKJ3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
CTC1Q2NKJ3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CTC1Q2NKJ3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.33■■■□□ 2.45
CTC1Q2NKJ3 AL162393.1-201ENST00000437852 946 ntBASIC30.31■■■□□ 2.44
CTC1Q2NKJ3 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.31■■■□□ 2.44
CTC1Q2NKJ3 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.29■■■□□ 2.44
CTC1Q2NKJ3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.28■■■□□ 2.44
CTC1Q2NKJ3 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CTC1Q2NKJ3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
CTC1Q2NKJ3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CTC1Q2NKJ3 AP006261.1-201ENST00000584783 668 ntBASIC30.24■■■□□ 2.43
CTC1Q2NKJ3 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CTC1Q2NKJ3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CTC1Q2NKJ3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.2■■■□□ 2.43
CTC1Q2NKJ3 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CTC1Q2NKJ3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CTC1Q2NKJ3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CTC1Q2NKJ3 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.17■■■□□ 2.42
CTC1Q2NKJ3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.16■■■□□ 2.42
CTC1Q2NKJ3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.16■■■□□ 2.42
CTC1Q2NKJ3 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CTC1Q2NKJ3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
CTC1Q2NKJ3 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
CTC1Q2NKJ3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
CTC1Q2NKJ3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.14■■■□□ 2.42
CTC1Q2NKJ3 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.14■■■□□ 2.41
CTC1Q2NKJ3 AL391121.1-201ENST00000607967 1349 ntBASIC30.13■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms