Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 AL031258.1-201ENST00000623562 325 ntBASIC30.27■■■□□ 2.44
COL4A2P08572 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
COL4A2P08572 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
COL4A2P08572 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.19■■■□□ 2.42
COL4A2P08572 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.19■■■□□ 2.42
COL4A2P08572 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.17■■■□□ 2.42
COL4A2P08572 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC30.17■■■□□ 2.42
COL4A2P08572 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.14■■■□□ 2.42
COL4A2P08572 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL4A2P08572 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL4A2P08572 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.07■■■□□ 2.4
COL4A2P08572 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
COL4A2P08572 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.03■■■□□ 2.4
COL4A2P08572 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC29.99■■■□□ 2.39
COL4A2P08572 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC29.97■■■□□ 2.39
COL4A2P08572 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL4A2P08572 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
COL4A2P08572 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.94■■■□□ 2.38
COL4A2P08572 RARRES2P7-201ENST00000567349 469 ntBASIC29.94■■■□□ 2.38
COL4A2P08572 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
COL4A2P08572 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
COL4A2P08572 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29.91■■■□□ 2.38
COL4A2P08572 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
COL4A2P08572 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC29.86■■■□□ 2.37
COL4A2P08572 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC29.85■■■□□ 2.37
COL4A2P08572 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC29.84■■■□□ 2.37
COL4A2P08572 AC136428.2-201ENST00000563187 214 ntBASIC29.83■■■□□ 2.37
COL4A2P08572 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL4A2P08572 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.79■■■□□ 2.36
COL4A2P08572 EBPL-203ENST00000378270 579 ntTSL 2 BASIC29.79■■■□□ 2.36
COL4A2P08572 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC29.76■■■□□ 2.35
COL4A2P08572 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL4A2P08572 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.74■■■□□ 2.35
COL4A2P08572 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
COL4A2P08572 SUZ12P1-203ENST00000578195 985 ntBASIC29.65■■■□□ 2.34
COL4A2P08572 SETD8P1-201ENST00000623146 1180 ntBASIC29.65■■■□□ 2.34
COL4A2P08572 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC29.64■■■□□ 2.34
COL4A2P08572 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
COL4A2P08572 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC29.64■■■□□ 2.34
COL4A2P08572 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
COL4A2P08572 AC097358.2-201ENST00000607541 1159 ntBASIC29.61■■■□□ 2.33
COL4A2P08572 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
COL4A2P08572 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.59■■■□□ 2.33
COL4A2P08572 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
COL4A2P08572 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.57■■■□□ 2.32
COL4A2P08572 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
COL4A2P08572 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.56■■■□□ 2.32
COL4A2P08572 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.55■■■□□ 2.32
COL4A2P08572 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
COL4A2P08572 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
COL4A2P08572 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.53■■■□□ 2.32
COL4A2P08572 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.5■■■□□ 2.31
COL4A2P08572 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.49■■■□□ 2.31
COL4A2P08572 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC29.48■■■□□ 2.31
COL4A2P08572 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC29.48■■■□□ 2.31
COL4A2P08572 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
COL4A2P08572 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.45■■■□□ 2.31
COL4A2P08572 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.42■■■□□ 2.3
COL4A2P08572 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.41■■■□□ 2.3
COL4A2P08572 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A2P08572 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL4A2P08572 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC29.4■■■□□ 2.3
COL4A2P08572 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL4A2P08572 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL4A2P08572 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL4A2P08572 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL4A2P08572 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
COL4A2P08572 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC29.32■■■□□ 2.28
COL4A2P08572 AC145285.7-201ENST00000614819 1539 ntBASIC29.32■■■□□ 2.28
COL4A2P08572 RPS2P35-201ENST00000443417 897 ntBASIC29.31■■■□□ 2.28
COL4A2P08572 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.27■■■□□ 2.28
COL4A2P08572 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.21■■■□□ 2.27
COL4A2P08572 MVK-208ENST00000539696 608 ntTSL 5 BASIC29.2■■■□□ 2.27
COL4A2P08572 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.19■■■□□ 2.26
COL4A2P08572 AL162393.1-201ENST00000437852 946 ntBASIC29.18■■■□□ 2.26
COL4A2P08572 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL4A2P08572 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL4A2P08572 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL4A2P08572 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
COL4A2P08572 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
COL4A2P08572 CAHM-201ENST00000604200 896 ntBASIC29.11■■■□□ 2.25
COL4A2P08572 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
COL4A2P08572 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
COL4A2P08572 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.1■■■□□ 2.25
COL4A2P08572 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.1■■■□□ 2.25
COL4A2P08572 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.09■■■□□ 2.25
COL4A2P08572 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
COL4A2P08572 AL133380.1-201ENST00000506013 324 ntBASIC29.07■■■□□ 2.24
COL4A2P08572 AL391121.1-201ENST00000607967 1349 ntBASIC29.06■■■□□ 2.24
COL4A2P08572 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC29.06■■■□□ 2.24
COL4A2P08572 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC29.05■■■□□ 2.24
COL4A2P08572 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
COL4A2P08572 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.03■■■□□ 2.24
COL4A2P08572 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
COL4A2P08572 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
COL4A2P08572 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
COL4A2P08572 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.01■■■□□ 2.23
COL4A2P08572 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
COL4A2P08572 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
COL4A2P08572 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.98■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms