Protein–RNA interactions for Protein: A0A0B4J241

TRAV13-1, T-cell receptor alpha variable 13-1 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV13-1A0A0B4J241 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TRAV13-1A0A0B4J241 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV13-1A0A0B4J241 AC145285.7-201ENST00000614819 1539 ntBASIC19.86■□□□□ 0.77
TRAV13-1A0A0B4J241 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV13-1A0A0B4J241 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV13-1A0A0B4J241 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
TRAV13-1A0A0B4J241 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV13-1A0A0B4J241 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV13-1A0A0B4J241 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
TRAV13-1A0A0B4J241 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV13-1A0A0B4J241 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV13-1A0A0B4J241 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV13-1A0A0B4J241 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV13-1A0A0B4J241 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAV13-1A0A0B4J241 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV13-1A0A0B4J241 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV13-1A0A0B4J241 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
TRAV13-1A0A0B4J241 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC19.75■□□□□ 0.75
TRAV13-1A0A0B4J241 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC19.74■□□□□ 0.75
TRAV13-1A0A0B4J241 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV13-1A0A0B4J241 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
TRAV13-1A0A0B4J241 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV13-1A0A0B4J241 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV13-1A0A0B4J241 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV13-1A0A0B4J241 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV13-1A0A0B4J241 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV13-1A0A0B4J241 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV13-1A0A0B4J241 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAV13-1A0A0B4J241 ST7-205ENST00000393446 2114 ntTSL 5 BASIC19.67■□□□□ 0.74
TRAV13-1A0A0B4J241 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV13-1A0A0B4J241 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV13-1A0A0B4J241 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV13-1A0A0B4J241 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV13-1A0A0B4J241 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV13-1A0A0B4J241 ST7-202ENST00000323984 2142 ntTSL 5 BASIC19.62■□□□□ 0.73
TRAV13-1A0A0B4J241 ST7-207ENST00000393449 2127 ntTSL 5 BASIC19.62■□□□□ 0.73
TRAV13-1A0A0B4J241 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV13-1A0A0B4J241 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TRAV13-1A0A0B4J241 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
TRAV13-1A0A0B4J241 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TRAV13-1A0A0B4J241 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRAV13-1A0A0B4J241 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV13-1A0A0B4J241 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV13-1A0A0B4J241 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV13-1A0A0B4J241 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC19.55■□□□□ 0.72
TRAV13-1A0A0B4J241 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV13-1A0A0B4J241 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV13-1A0A0B4J241 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV13-1A0A0B4J241 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC19.53■□□□□ 0.72
TRAV13-1A0A0B4J241 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC19.52■□□□□ 0.72
TRAV13-1A0A0B4J241 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV13-1A0A0B4J241 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV13-1A0A0B4J241 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV13-1A0A0B4J241 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
TRAV13-1A0A0B4J241 INO80B-203ENST00000409917 796 ntTSL 2 BASIC19.5■□□□□ 0.71
TRAV13-1A0A0B4J241 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV13-1A0A0B4J241 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV13-1A0A0B4J241 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV13-1A0A0B4J241 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV13-1A0A0B4J241 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
TRAV13-1A0A0B4J241 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV13-1A0A0B4J241 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV13-1A0A0B4J241 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV13-1A0A0B4J241 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV13-1A0A0B4J241 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV13-1A0A0B4J241 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TRAV13-1A0A0B4J241 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV13-1A0A0B4J241 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC19.43■□□□□ 0.7
TRAV13-1A0A0B4J241 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV13-1A0A0B4J241 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TRAV13-1A0A0B4J241 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV13-1A0A0B4J241 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
TRAV13-1A0A0B4J241 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV13-1A0A0B4J241 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV13-1A0A0B4J241 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV13-1A0A0B4J241 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV13-1A0A0B4J241 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAV13-1A0A0B4J241 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV13-1A0A0B4J241 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
TRAV13-1A0A0B4J241 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TRAV13-1A0A0B4J241 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV13-1A0A0B4J241 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC19.36■□□□□ 0.69
TRAV13-1A0A0B4J241 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV13-1A0A0B4J241 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV13-1A0A0B4J241 AC015813.7-201ENST00000623294 581 ntBASIC19.35■□□□□ 0.69
TRAV13-1A0A0B4J241 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV13-1A0A0B4J241 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV13-1A0A0B4J241 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV13-1A0A0B4J241 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV13-1A0A0B4J241 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV13-1A0A0B4J241 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV13-1A0A0B4J241 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV13-1A0A0B4J241 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV13-1A0A0B4J241 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV13-1A0A0B4J241 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TRAV13-1A0A0B4J241 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV13-1A0A0B4J241 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRAV13-1A0A0B4J241 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRAV13-1A0A0B4J241 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV13-1A0A0B4J241 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms