Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.6■□□□□ 0.09
HNF4AP41235 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.6■□□□□ 0.09
HNF4AP41235 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
HNF4AP41235 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 MIR346-201ENST00000362234 95 ntBASIC15.59■□□□□ 0.09
HNF4AP41235 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.59■□□□□ 0.09
HNF4AP41235 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.59■□□□□ 0.09
HNF4AP41235 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 SLC25A39P2-201ENST00000537614 270 ntBASIC15.59■□□□□ 0.09
HNF4AP41235 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 LINC01225-203ENST00000563550 1244 ntBASIC15.59■□□□□ 0.09
HNF4AP41235 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.59■□□□□ 0.09
HNF4AP41235 AP000842.3-202ENST00000569238 1080 ntBASIC15.59■□□□□ 0.09
HNF4AP41235 AC061975.2-201ENST00000581722 295 ntBASIC15.59■□□□□ 0.09
HNF4AP41235 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.59■□□□□ 0.09
HNF4AP41235 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
HNF4AP41235 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
HNF4AP41235 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
HNF4AP41235 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
HNF4AP41235 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
HNF4AP41235 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
HNF4AP41235 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
HNF4AP41235 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.58■□□□□ 0.09
HNF4AP41235 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.58■□□□□ 0.09
HNF4AP41235 AC105917.1-201ENST00000506637 2539 ntBASIC15.58■□□□□ 0.09
HNF4AP41235 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
HNF4AP41235 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
HNF4AP41235 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.58■□□□□ 0.08
HNF4AP41235 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.58■□□□□ 0.08
HNF4AP41235 FAM220BP-201ENST00000377689 816 ntBASIC15.58■□□□□ 0.08
HNF4AP41235 CNN2P11-201ENST00000429351 262 ntBASIC15.58■□□□□ 0.08
HNF4AP41235 DNAJB3-202ENST00000449667 1266 ntBASIC15.58■□□□□ 0.08
HNF4AP41235 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.58■□□□□ 0.08
HNF4AP41235 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.58■□□□□ 0.08
HNF4AP41235 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
HNF4AP41235 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
HNF4AP41235 AC004835.2-201ENST00000603762 682 ntBASIC15.58■□□□□ 0.08
HNF4AP41235 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.58■□□□□ 0.08
HNF4AP41235 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.58■□□□□ 0.08
HNF4AP41235 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.58■□□□□ 0.08
HNF4AP41235 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.58■□□□□ 0.08
HNF4AP41235 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HNF4AP41235 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.58■□□□□ 0.08
HNF4AP41235 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms