Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 RN7SL606P-201ENST00000472779 293 ntBASIC12.97□□□□□ -0.33
HMGB3O15347 YBX1P2-201ENST00000489612 999 ntBASIC12.97□□□□□ -0.33
HMGB3O15347 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC12.97□□□□□ -0.33
HMGB3O15347 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
HMGB3O15347 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC12.97□□□□□ -0.33
HMGB3O15347 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
HMGB3O15347 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HMGB3O15347 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC12.97□□□□□ -0.33
HMGB3O15347 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC12.97□□□□□ -0.33
HMGB3O15347 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.97□□□□□ -0.33
HMGB3O15347 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HMGB3O15347 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
HMGB3O15347 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
HMGB3O15347 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC12.96□□□□□ -0.33
HMGB3O15347 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC12.96□□□□□ -0.33
HMGB3O15347 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 MAN2B2-201ENST00000285599 5143 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 AC016027.1-202ENST00000607927 1699 ntBASIC12.96□□□□□ -0.33
HMGB3O15347 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
HMGB3O15347 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.96□□□□□ -0.33
HMGB3O15347 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.96□□□□□ -0.33
HMGB3O15347 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC12.96□□□□□ -0.33
HMGB3O15347 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
HMGB3O15347 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC12.96□□□□□ -0.33
HMGB3O15347 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC12.96□□□□□ -0.33
HMGB3O15347 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC12.96□□□□□ -0.33
HMGB3O15347 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC12.96□□□□□ -0.33
HMGB3O15347 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
HMGB3O15347 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC12.96□□□□□ -0.33
HMGB3O15347 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.96□□□□□ -0.33
HMGB3O15347 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.96□□□□□ -0.33
HMGB3O15347 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HMGB3O15347 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC12.96□□□□□ -0.33
HMGB3O15347 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HMGB3O15347 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC12.96□□□□□ -0.34
HMGB3O15347 PC-214ENST00000628663 1470 ntTSL 5 BASIC12.96□□□□□ -0.34
HMGB3O15347 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
HMGB3O15347 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.96□□□□□ -0.34
HMGB3O15347 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC12.96□□□□□ -0.34
HMGB3O15347 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
HMGB3O15347 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HMGB3O15347 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
HMGB3O15347 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HMGB3O15347 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
HMGB3O15347 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
HMGB3O15347 RNF165-202ENST00000543885 4852 ntTSL 2 BASIC12.95□□□□□ -0.34
HMGB3O15347 FAM45BP-202ENST00000592932 1624 ntBASIC12.95□□□□□ -0.34
HMGB3O15347 AC004817.3-201ENST00000602957 2129 ntBASIC12.95□□□□□ -0.34
HMGB3O15347 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 CICP4-201ENST00000447359 2812 ntBASIC12.95□□□□□ -0.34
HMGB3O15347 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC12.95□□□□□ -0.34
HMGB3O15347 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.95□□□□□ -0.34
HMGB3O15347 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HMGB3O15347 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12.95□□□□□ -0.34
HMGB3O15347 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC12.95□□□□□ -0.34
HMGB3O15347 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HMGB3O15347 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC12.95□□□□□ -0.34
HMGB3O15347 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
HMGB3O15347 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 CD9-202ENST00000382515 1229 ntTSL 5 BASIC12.95□□□□□ -0.34
HMGB3O15347 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC12.95□□□□□ -0.34
HMGB3O15347 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HMGB3O15347 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HMGB3O15347 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC12.95□□□□□ -0.34
HMGB3O15347 AC009533.2-201ENST00000543664 586 ntBASIC12.95□□□□□ -0.34
HMGB3O15347 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms