Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 IGHV3-71-201ENST00000523324 359 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 MNT-208ENST00000575394 606 ntTSL 4 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 MPDU1-223ENST00000582151 728 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 WT1-AS_2.1-201ENST00000613208 137 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AL161645.1-201ENST00000622716 1255 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 MBP-202ENST00000355994 2772 ntTSL 5 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SLC25A1P3-201ENST00000395415 828 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC112492.5-201ENST00000421897 457 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 CDC14C-201ENST00000428251 1719 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 PCDHB17P-201ENST00000539533 2393 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 HNRNPA1P40-201ENST00000426371 1278 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 IGHV3-62-201ENST00000520057 340 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 FAM86C2P-203ENST00000528684 1004 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 CR383656.12-201ENST00000549567 513 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AL596325.1-201ENST00000563991 1082 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AL135744.1-201ENST00000565098 629 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AL645728.1-201ENST00000366221 2101 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC069120.2-201ENST00000524091 540 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC004840.1-201ENST00000636359 365 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 WDR47-204ENST00000369965 4240 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC125807.1-201ENST00000483097 614 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms