Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 PEG13-201ENST00000631594 5667 ntBASIC11.37□□□□□ -0.59
CKS1BP61024 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 TERF1P1-201ENST00000311003 1181 ntBASIC11.37□□□□□ -0.59
CKS1BP61024 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 AC117947.1-201ENST00000427448 529 ntBASIC11.37□□□□□ -0.59
CKS1BP61024 DANCR-204ENST00000444958 709 ntTSL 3 BASIC11.37□□□□□ -0.59
CKS1BP61024 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 AC009533.2-201ENST00000543664 586 ntBASIC11.37□□□□□ -0.59
CKS1BP61024 CLN6-204ENST00000564752 900 ntTSL 3 BASIC11.37□□□□□ -0.59
CKS1BP61024 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 LINC01238-205ENST00000567549 1107 ntBASIC11.37□□□□□ -0.59
CKS1BP61024 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 AL592071.1-201ENST00000611956 408 ntBASIC11.37□□□□□ -0.59
CKS1BP61024 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 AC133561.5-201ENST00000635547 218 ntBASIC11.37□□□□□ -0.59
CKS1BP61024 CLN6-214ENST00000636314 442 ntTSL 3 BASIC11.37□□□□□ -0.59
CKS1BP61024 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.37□□□□□ -0.59
CKS1BP61024 AC131902.2-201ENST00000566892 2172 ntBASIC11.37□□□□□ -0.59
CKS1BP61024 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC11.37□□□□□ -0.59
CKS1BP61024 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CKS1BP61024 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 CICP17-201ENST00000418553 2377 ntBASIC11.36□□□□□ -0.59
CKS1BP61024 AC027612.1-201ENST00000445234 2395 ntBASIC11.36□□□□□ -0.59
CKS1BP61024 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC11.36□□□□□ -0.59
CKS1BP61024 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC11.36□□□□□ -0.59
CKS1BP61024 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
CKS1BP61024 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC11.36□□□□□ -0.59
CKS1BP61024 HLA-A-202ENST00000376806 1854 ntBASIC11.36□□□□□ -0.59
CKS1BP61024 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC11.36□□□□□ -0.59
CKS1BP61024 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CKS1BP61024 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms