RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 PELP1Q8IZL8 1130 aaKnown RBP22.07■■□□□ 1.12
VAMP4-201ENST00000236192 MYT1Q01538 1121 aa21.87■■□□□ 1.09
VAMP4-201ENST00000236192 HRCP23327 699 aa20.64■□□□□ 0.9
VAMP4-201ENST00000236192 PCGF6Q9BYE7 350 aa20.53■□□□□ 0.88
VAMP4-201ENST00000236192 CENPBP07199 599 aaPredicted RBP20.43■□□□□ 0.86
VAMP4-201ENST00000236192 ZEB1P37275 1124 aaPredicted RBP20.34■□□□□ 0.85
VAMP4-201ENST00000236192 TTBK1Q5TCY1 1321 aaPredicted RBP20.3■□□□□ 0.84
VAMP4-201ENST00000236192 SUPT5HO00267 1087 aaKnown RBP20.17■□□□□ 0.82
VAMP4-201ENST00000236192 PPARGC1BQ86YN6 1023 aaKnown RBP19.99■□□□□ 0.79
VAMP4-201ENST00000236192 NISCHQ9Y2I1 1504 aa19.97■□□□□ 0.79
VAMP4-201ENST00000236192 ERICH6Q7L0X2 663 aa19.8■□□□□ 0.76
VAMP4-201ENST00000236192 TRIM26Q12899 539 aaPredicted RBP19.63■□□□□ 0.73
VAMP4-201ENST00000236192 CCER1Q8TC90 406 aaPredicted RBP19.61■□□□□ 0.73
VAMP4-201ENST00000236192 GTF3C3Q9Y5Q9 886 aa19.57■□□□□ 0.72
VAMP4-201ENST00000236192 YTHDC1Q96MU7 727 aaKnown RBP19.54■□□□□ 0.72
VAMP4-201ENST00000236192 SCAF1Q9H7N4 1312 aaKnown RBP19.53■□□□□ 0.72
VAMP4-201ENST00000236192 SHROOM4Q9ULL8 1493 aa19.53■□□□□ 0.72
VAMP4-201ENST00000236192 ACIN1Q9UKV3 1341 aaKnown RBP19.5■□□□□ 0.71
VAMP4-201ENST00000236192 DIEXFQ68CQ4 756 aaKnown RBP19.21■□□□□ 0.67
VAMP4-201ENST00000236192 DCAF8L2P0C7V8 631 aa19.21■□□□□ 0.67
VAMP4-201ENST00000236192 NEFLP07196 543 aa19.2■□□□□ 0.66
VAMP4-201ENST00000236192 BCL11AQ9H165 835 aa19.11■□□□□ 0.65
VAMP4-201ENST00000236192 EHMT2Q96KQ7 1210 aa19.09■□□□□ 0.65
VAMP4-201ENST00000236192 NEUROD1Q13562 356 aa19.05■□□□□ 0.64
VAMP4-201ENST00000236192 CHIC1Q5VXU3 224 aa18.97■□□□□ 0.63
VAMP4-201ENST00000236192 ANP32EQ9BTT0 268 aa18.92■□□□□ 0.62
VAMP4-201ENST00000236192 FAM9AQ8IZU1 332 aaPredicted RBP18.85■□□□□ 0.61
VAMP4-201ENST00000236192 CLSPNQ9HAW4 1339 aa18.85■□□□□ 0.61
VAMP4-201ENST00000236192 LOC105371045A0A1W2PR82 267 aa18.81■□□□□ 0.6
VAMP4-201ENST00000236192 RTL5Q5HYW3 569 aaPredicted RBP18.79■□□□□ 0.6
VAMP4-201ENST00000236192 MYT1LQ9UL68 1186 aa18.78■□□□□ 0.6
VAMP4-201ENST00000236192 DCAF1Q9Y4B6 1507 aa18.71■□□□□ 0.59
VAMP4-201ENST00000236192 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.7■□□□□ 0.58
VAMP4-201ENST00000236192 APLP2Q06481 763 aa18.68■□□□□ 0.58
VAMP4-201ENST00000236192 TRIM41Q8WV44 630 aa18.65■□□□□ 0.58
VAMP4-201ENST00000236192 ZNF316A6NFI3 1004 aaPredicted RBP18.61■□□□□ 0.57
VAMP4-201ENST00000236192 BCANQ96GW7 911 aa18.56■□□□□ 0.56
VAMP4-201ENST00000236192 CDK11AQ9UQ88 783 aaPredicted RBP18.48■□□□□ 0.55
VAMP4-201ENST00000236192 GLIPR1L2Q4G1C9 344 aa18.48■□□□□ 0.55
VAMP4-201ENST00000236192 EIF5BO60841 1220 aaKnown RBP18.45■□□□□ 0.54
VAMP4-201ENST00000236192 PRKCSHP14314 528 aaPredicted RBP18.43■□□□□ 0.54
VAMP4-201ENST00000236192 CCDC180Q9P1Z9 1646 aa18.38■□□□□ 0.53
VAMP4-201ENST00000236192 DAXXQ9UER7 740 aaPredicted RBP18.36■□□□□ 0.53
VAMP4-201ENST00000236192 CSRNP3Q8WYN3 585 aa18.34■□□□□ 0.53
VAMP4-201ENST00000236192 FKBP8Q14318 412 aa18.23■□□□□ 0.51
VAMP4-201ENST00000236192 MYO15BQ96JP2 1530 aa18.15■□□□□ 0.5
VAMP4-201ENST00000236192 MIER1Q8N108 512 aa18.14■□□□□ 0.49
VAMP4-201ENST00000236192 ANP32AP39687 249 aaKnown RBP18.14■□□□□ 0.49
VAMP4-201ENST00000236192 SUPT16HQ9Y5B9 1047 aaKnown RBP18.13■□□□□ 0.49
VAMP4-201ENST00000236192 NBR1Q14596 966 aa18.1■□□□□ 0.49
VAMP4-201ENST00000236192 HNRNPUL2Q1KMD3 747 aaKnown RBP18.1■□□□□ 0.49
VAMP4-201ENST00000236192 UBTFP17480 764 aaKnown RBP18.05■□□□□ 0.48
VAMP4-201ENST00000236192 TSHZ2Q9NRE2 1034 aa18.04■□□□□ 0.48
VAMP4-201ENST00000236192 DEKP35659 375 aaKnown RBP18.03■□□□□ 0.48
VAMP4-201ENST00000236192 ERICH6BQ5W0A0 696 aa17.98■□□□□ 0.47
VAMP4-201ENST00000236192 RBM19Q9Y4C8 960 aaKnown RBP17.91■□□□□ 0.46
VAMP4-201ENST00000236192 ZBTB47Q9UFB7 747 aaPredicted RBP17.91■□□□□ 0.46
VAMP4-201ENST00000236192 ANP32CO43423 234 aa17.9■□□□□ 0.46
VAMP4-201ENST00000236192 RTN4Q9NQC3 1192 aaKnown RBP17.88■□□□□ 0.45
VAMP4-201ENST00000236192 ITGAEP38570 1179 aa17.86■□□□□ 0.45
VAMP4-201ENST00000236192 RANGAP1P46060 587 aaPredicted RBP17.76■□□□□ 0.43
VAMP4-201ENST00000236192 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.76■□□□□ 0.43
VAMP4-201ENST00000236192 NOP58Q9Y2X3 529 aaKnown RBP17.75■□□□□ 0.43
VAMP4-201ENST00000236192 NPM2Q86SE8 214 aaKnown RBP17.73■□□□□ 0.43
VAMP4-201ENST00000236192 CCDC136Q96JN2 1154 aa17.7■□□□□ 0.42
VAMP4-201ENST00000236192 ANO8Q9HCE9 1232 aaPredicted RBP17.67■□□□□ 0.42
VAMP4-201ENST00000236192 NEFMP07197 916 aa17.66■□□□□ 0.42
VAMP4-201ENST00000236192 SLC24A1O60721 1099 aa17.59■□□□□ 0.41
VAMP4-201ENST00000236192 TRIM52Q96A61 297 aa17.58■□□□□ 0.41
VAMP4-201ENST00000236192 PPM1GO15355 546 aaPredicted RBP17.57■□□□□ 0.4
VAMP4-201ENST00000236192 PKNOX2Q96KN3 472 aa17.56■□□□□ 0.4
VAMP4-201ENST00000236192 HNRNPUQ00839 825 aaKnown RBP eCLIP17.54■□□□□ 0.4
VAMP4-201ENST00000236192 FANCIQ9NVI1 1328 aa17.5■□□□□ 0.39
VAMP4-201ENST00000236192 IRX6P78412 446 aaPredicted RBP17.5■□□□□ 0.39
VAMP4-201ENST00000236192 NAP1L5Q96NT1 182 aaPredicted RBP17.48■□□□□ 0.39
VAMP4-201ENST00000236192 DDX10Q13206 875 aaKnown RBP17.47■□□□□ 0.39
VAMP4-201ENST00000236192 RSPH6AQ9H0K4 717 aa17.47■□□□□ 0.39
VAMP4-201ENST00000236192 DDRGK1Q96HY6 314 aa17.46■□□□□ 0.39
VAMP4-201ENST00000236192 PPP4R2Q9NY27 417 aa17.45■□□□□ 0.38
VAMP4-201ENST00000236192 UBE2Q2Q8WVN8 375 aa17.45■□□□□ 0.38
VAMP4-201ENST00000236192 SALL2Q9Y467 1007 aaPredicted RBP17.45■□□□□ 0.38
VAMP4-201ENST00000236192 PODXL2Q9NZ53 605 aa17.41■□□□□ 0.38
VAMP4-201ENST00000236192 VSIG10Q8N0Z9 540 aa17.39■□□□□ 0.37
VAMP4-201ENST00000236192 ANP32BQ92688 251 aaKnown RBP17.39■□□□□ 0.37
VAMP4-201ENST00000236192 LAS1LQ9Y4W2 734 aaKnown RBP17.38■□□□□ 0.37
VAMP4-201ENST00000236192 HSP90AA1P07900 732 aaKnown RBP17.37■□□□□ 0.37
VAMP4-201ENST00000236192 TNNT2P45379 298 aaPredicted RBP17.37■□□□□ 0.37
VAMP4-201ENST00000236192 POLR3GLQ9BT43 218 aa17.35■□□□□ 0.37
VAMP4-201ENST00000236192 CNGB1Q14028 1251 aaPredicted RBP17.32■□□□□ 0.36
VAMP4-201ENST00000236192 ATP1B4Q9UN42 357 aaPredicted RBP17.31■□□□□ 0.36
VAMP4-201ENST00000236192 NCLP19338 710 aaKnown RBP17.27■□□□□ 0.36
VAMP4-201ENST00000236192 USP35Q9P2H5 1018 aa17.26■□□□□ 0.35
VAMP4-201ENST00000236192 HSP90AA2PQ14568 343 aaPredicted RBP17.26■□□□□ 0.35
VAMP4-201ENST00000236192 IPO9Q96P70 1041 aaKnown RBP17.26■□□□□ 0.35
VAMP4-201ENST00000236192 TRIM44Q96DX7 344 aaPredicted RBP17.24■□□□□ 0.35
VAMP4-201ENST00000236192 ARXQ96QS3 562 aa17.24■□□□□ 0.35
VAMP4-201ENST00000236192 FAM9BQ8IZU0 186 aa17.2■□□□□ 0.34
VAMP4-201ENST00000236192 L1TD1Q5T7N2 865 aaKnown RBP17.19■□□□□ 0.34
VAMP4-201ENST00000236192 B4GALNT3Q6L9W6 998 aa17.18■□□□□ 0.34
VAMP4-201ENST00000236192 TIMELESSQ9UNS1 1208 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms