Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.43■□□□□ 0.06
PDLIM1O00151 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
PDLIM1O00151 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
PDLIM1O00151 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.43■□□□□ 0.06
PDLIM1O00151 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
PDLIM1O00151 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PDLIM1O00151 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
PDLIM1O00151 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
PDLIM1O00151 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.42■□□□□ 0.06
PDLIM1O00151 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.42■□□□□ 0.06
PDLIM1O00151 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 PCGF3-213ENST00000620529 1899 ntBASIC15.42■□□□□ 0.06
PDLIM1O00151 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.42■□□□□ 0.06
PDLIM1O00151 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.42■□□□□ 0.06
PDLIM1O00151 AC243591.1-201ENST00000452967 1364 ntBASIC15.42■□□□□ 0.06
PDLIM1O00151 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
PDLIM1O00151 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
PDLIM1O00151 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.42■□□□□ 0.06
PDLIM1O00151 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
PDLIM1O00151 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
PDLIM1O00151 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
PDLIM1O00151 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PDLIM1O00151 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
PDLIM1O00151 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.41■□□□□ 0.06
PDLIM1O00151 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PDLIM1O00151 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.41■□□□□ 0.06
PDLIM1O00151 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.41■□□□□ 0.06
PDLIM1O00151 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.41■□□□□ 0.06
PDLIM1O00151 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 FDX1P1-201ENST00000449115 551 ntBASIC15.41■□□□□ 0.06
PDLIM1O00151 SCARNA2-201ENST00000458748 420 ntBASIC15.41■□□□□ 0.06
PDLIM1O00151 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.41■□□□□ 0.06
PDLIM1O00151 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 SART3-203ENST00000546611 1184 ntBASIC15.41■□□□□ 0.06
PDLIM1O00151 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC15.41■□□□□ 0.06
PDLIM1O00151 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
PDLIM1O00151 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.41■□□□□ 0.06
PDLIM1O00151 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.41■□□□□ 0.06
PDLIM1O00151 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.41■□□□□ 0.06
PDLIM1O00151 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.41■□□□□ 0.06
PDLIM1O00151 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.41■□□□□ 0.06
PDLIM1O00151 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.41■□□□□ 0.06
PDLIM1O00151 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
PDLIM1O00151 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.41■□□□□ 0.06
PDLIM1O00151 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.41■□□□□ 0.06
PDLIM1O00151 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 AL109954.1-202ENST00000564051 2148 ntBASIC15.41■□□□□ 0.06
PDLIM1O00151 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.41■□□□□ 0.06
PDLIM1O00151 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.41■□□□□ 0.06
PDLIM1O00151 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.41■□□□□ 0.06
PDLIM1O00151 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
PDLIM1O00151 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.41■□□□□ 0.06
PDLIM1O00151 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDLIM1O00151 AC005912.2-201ENST00000619492 2400 ntBASIC15.41■□□□□ 0.06
PDLIM1O00151 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDLIM1O00151 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDLIM1O00151 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
PDLIM1O00151 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.4■□□□□ 0.06
PDLIM1O00151 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.4■□□□□ 0.06
PDLIM1O00151 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.4■□□□□ 0.06
PDLIM1O00151 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PDLIM1O00151 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDLIM1O00151 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDLIM1O00151 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDLIM1O00151 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDLIM1O00151 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.4■□□□□ 0.06
PDLIM1O00151 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDLIM1O00151 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDLIM1O00151 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms