Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 SPDYE18-201ENST00000510091 1050 ntBASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.31□□□□□ -0.12
CLCF1Q9UBD9 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AC063926.3-201ENST00000624734 5658 ntBASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AC025048.3-201ENST00000590609 569 ntBASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AL132655.2-201ENST00000596276 594 ntBASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AC004790.1-201ENST00000612686 536 ntBASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AL662799.1-202ENST00000614205 422 ntBASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AC005702.4-201ENST00000618393 416 ntBASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AL109936.8-201ENST00000641772 604 ntBASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLCF1Q9UBD9 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms