Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
NKX3-1Q99801 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NKX3-1Q99801 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 KRT18P27-201ENST00000427733 1299 ntBASIC14.15□□□□□ -0.14
NKX3-1Q99801 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 SCARNA2-201ENST00000458748 420 ntBASIC14.15□□□□□ -0.14
NKX3-1Q99801 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 AC006557.2-201ENST00000592985 1240 ntBASIC14.15□□□□□ -0.14
NKX3-1Q99801 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 TP73-AS1-207ENST00000624167 988 ntBASIC14.15□□□□□ -0.14
NKX3-1Q99801 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NKX3-1Q99801 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
NKX3-1Q99801 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.15□□□□□ -0.15
NKX3-1Q99801 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
NKX3-1Q99801 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.14□□□□□ -0.15
NKX3-1Q99801 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 AC012640.2-201ENST00000561606 901 ntBASIC14.14□□□□□ -0.15
NKX3-1Q99801 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NKX3-1Q99801 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.14□□□□□ -0.15
NKX3-1Q99801 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms