Protein–RNA interactions for Protein: Q9HCU0

CD248, Endosialin, humanhuman

Predictions only

Length 757 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD248Q9HCU0 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.08■□□□□ 0.33
CD248Q9HCU0 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.08■□□□□ 0.33
CD248Q9HCU0 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CD248Q9HCU0 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CD248Q9HCU0 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CD248Q9HCU0 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CD248Q9HCU0 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.08■□□□□ 0.33
CD248Q9HCU0 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CD248Q9HCU0 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CD248Q9HCU0 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.08■□□□□ 0.33
CD248Q9HCU0 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CD248Q9HCU0 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
CD248Q9HCU0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD248Q9HCU0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD248Q9HCU0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD248Q9HCU0 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CD248Q9HCU0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 SPCS2P4-201ENST00000436160 681 ntBASIC17.08■□□□□ 0.32
CD248Q9HCU0 AL592309.1-201ENST00000443127 649 ntBASIC17.08■□□□□ 0.32
CD248Q9HCU0 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 AC109635.5-201ENST00000533593 962 ntBASIC17.08■□□□□ 0.32
CD248Q9HCU0 AC051619.7-201ENST00000568314 623 ntBASIC17.08■□□□□ 0.32
CD248Q9HCU0 AL009183.1-201ENST00000603760 355 ntBASIC17.08■□□□□ 0.32
CD248Q9HCU0 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 Z92544.3-201ENST00000624747 417 ntBASIC17.08■□□□□ 0.32
CD248Q9HCU0 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CD248Q9HCU0 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD248Q9HCU0 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CD248Q9HCU0 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CD248Q9HCU0 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CD248Q9HCU0 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.07■□□□□ 0.32
CD248Q9HCU0 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CD248Q9HCU0 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.06■□□□□ 0.32
CD248Q9HCU0 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
CD248Q9HCU0 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms