Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.33■□□□□ 0.2
PTPN4P29074 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.33■□□□□ 0.2
PTPN4P29074 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
PTPN4P29074 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.33■□□□□ 0.2
PTPN4P29074 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.33■□□□□ 0.2
PTPN4P29074 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
PTPN4P29074 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.33■□□□□ 0.2
PTPN4P29074 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN4P29074 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PTPN4P29074 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.32■□□□□ 0.2
PTPN4P29074 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 MRPL20P1-201ENST00000400819 433 ntBASIC16.32■□□□□ 0.2
PTPN4P29074 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PTPN4P29074 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.32■□□□□ 0.2
PTPN4P29074 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 AC010654.1-201ENST00000615722 808 ntBASIC16.32■□□□□ 0.2
PTPN4P29074 GGTLC5P-201ENST00000617623 998 ntBASIC16.32■□□□□ 0.2
PTPN4P29074 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 AC112504.1-201ENST00000623415 1841 ntBASIC16.32■□□□□ 0.2
PTPN4P29074 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN4P29074 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN4P29074 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.31■□□□□ 0.2
PTPN4P29074 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 GGT3P-204ENST00000453783 1664 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.31■□□□□ 0.2
PTPN4P29074 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.31■□□□□ 0.2
PTPN4P29074 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 AP002414.1-201ENST00000391405 1147 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 PTCHD3P3-201ENST00000403073 906 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 LINC00982-205ENST00000420957 435 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 PMS2P2-201ENST00000425039 1128 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 DNAJB3-202ENST00000449667 1266 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.31■□□□□ 0.2
PTPN4P29074 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.31■□□□□ 0.2
PTPN4P29074 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.31■□□□□ 0.2
PTPN4P29074 AC018845.2-201ENST00000568326 409 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PTPN4P29074 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
PTPN4P29074 AL353135.1-201ENST00000606729 504 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
PTPN4P29074 AL139011.1-202ENST00000642063 584 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 AC092865.6-201ENST00000642101 219 ntBASIC16.31■□□□□ 0.2
PTPN4P29074 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.31■□□□□ 0.2
PTPN4P29074 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN4P29074 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms