Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA2Q9Y261 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
FOXA2Q9Y261 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA2Q9Y261 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA2Q9Y261 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
FOXA2Q9Y261 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA2Q9Y261 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
FOXA2Q9Y261 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
FOXA2Q9Y261 AC133552.2-201ENST00000619106 1032 ntBASIC19.02■□□□□ 0.64
FOXA2Q9Y261 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.02■□□□□ 0.64
FOXA2Q9Y261 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
FOXA2Q9Y261 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
FOXA2Q9Y261 AC009831.1-201ENST00000580420 1582 ntBASIC19.02■□□□□ 0.63
FOXA2Q9Y261 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 RAP2CP1-202ENST00000605179 643 ntBASIC19.01■□□□□ 0.63
FOXA2Q9Y261 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA2Q9Y261 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
FOXA2Q9Y261 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19■□□□□ 0.63
FOXA2Q9Y261 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA2Q9Y261 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
FOXA2Q9Y261 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19■□□□□ 0.63
FOXA2Q9Y261 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA2Q9Y261 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA2Q9Y261 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19■□□□□ 0.63
FOXA2Q9Y261 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA2Q9Y261 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA2Q9Y261 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
FOXA2Q9Y261 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA2Q9Y261 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA2Q9Y261 RARA-203ENST00000394086 2008 ntTSL 2 BASIC18.98■□□□□ 0.63
FOXA2Q9Y261 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
FOXA2Q9Y261 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA2Q9Y261 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA2Q9Y261 NTF6A-201ENST00000591175 560 ntBASIC18.98■□□□□ 0.63
FOXA2Q9Y261 U85056.1-201ENST00000616429 682 ntBASIC18.98■□□□□ 0.63
FOXA2Q9Y261 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA2Q9Y261 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 LINC00543-201ENST00000567234 1845 ntBASIC18.97■□□□□ 0.63
FOXA2Q9Y261 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 AC141586.4-201ENST00000624558 1573 ntBASIC18.97■□□□□ 0.63
FOXA2Q9Y261 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA2Q9Y261 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC18.96■□□□□ 0.63
FOXA2Q9Y261 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA2Q9Y261 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA2Q9Y261 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.94■□□□□ 0.62
FOXA2Q9Y261 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
FOXA2Q9Y261 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.94■□□□□ 0.62
FOXA2Q9Y261 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA2Q9Y261 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA2Q9Y261 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms