Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.75■□□□□ 0.91
LIME1Q9H400 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.75■□□□□ 0.91
LIME1Q9H400 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
LIME1Q9H400 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIME1Q9H400 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIME1Q9H400 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIME1Q9H400 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.74■□□□□ 0.91
LIME1Q9H400 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.74■□□□□ 0.91
LIME1Q9H400 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.74■□□□□ 0.91
LIME1Q9H400 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIME1Q9H400 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
LIME1Q9H400 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIME1Q9H400 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIME1Q9H400 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.73■□□□□ 0.91
LIME1Q9H400 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.73■□□□□ 0.91
LIME1Q9H400 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.73■□□□□ 0.91
LIME1Q9H400 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.73■□□□□ 0.91
LIME1Q9H400 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIME1Q9H400 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIME1Q9H400 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIME1Q9H400 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIME1Q9H400 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
LIME1Q9H400 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIME1Q9H400 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIME1Q9H400 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LIME1Q9H400 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIME1Q9H400 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.71■□□□□ 0.91
LIME1Q9H400 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.71■□□□□ 0.91
LIME1Q9H400 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
LIME1Q9H400 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIME1Q9H400 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
LIME1Q9H400 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.7■□□□□ 0.9
LIME1Q9H400 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.9
LIME1Q9H400 DUSP8P4-201ENST00000399538 1761 ntBASIC20.7■□□□□ 0.9
LIME1Q9H400 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.7■□□□□ 0.9
LIME1Q9H400 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.7■□□□□ 0.9
LIME1Q9H400 AL139246.5-201ENST00000606645 996 ntBASIC20.7■□□□□ 0.9
LIME1Q9H400 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.7■□□□□ 0.9
LIME1Q9H400 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIME1Q9H400 AC092803.2-201ENST00000564287 1899 ntBASIC20.7■□□□□ 0.9
LIME1Q9H400 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.7■□□□□ 0.9
LIME1Q9H400 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LIME1Q9H400 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.69■□□□□ 0.9
LIME1Q9H400 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LIME1Q9H400 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIME1Q9H400 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
LIME1Q9H400 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIME1Q9H400 AP004609.3-201ENST00000610705 1884 ntBASIC20.69■□□□□ 0.9
LIME1Q9H400 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIME1Q9H400 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIME1Q9H400 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.68■□□□□ 0.9
LIME1Q9H400 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
LIME1Q9H400 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIME1Q9H400 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.68■□□□□ 0.9
LIME1Q9H400 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.68■□□□□ 0.9
LIME1Q9H400 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.68■□□□□ 0.9
LIME1Q9H400 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.68■□□□□ 0.9
LIME1Q9H400 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIME1Q9H400 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.67■□□□□ 0.9
LIME1Q9H400 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 KRT18P24-201ENST00000344739 1156 ntBASIC20.67■□□□□ 0.9
LIME1Q9H400 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.67■□□□□ 0.9
LIME1Q9H400 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIME1Q9H400 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIME1Q9H400 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIME1Q9H400 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.66■□□□□ 0.9
LIME1Q9H400 AC022616.5-201ENST00000518796 181 ntBASIC20.66■□□□□ 0.9
LIME1Q9H400 AC131281.2-201ENST00000520478 145 ntBASIC20.66■□□□□ 0.9
LIME1Q9H400 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.66■□□□□ 0.9
LIME1Q9H400 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIME1Q9H400 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIME1Q9H400 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIME1Q9H400 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.65■□□□□ 0.9
LIME1Q9H400 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.65■□□□□ 0.9
LIME1Q9H400 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIME1Q9H400 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIME1Q9H400 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIME1Q9H400 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIME1Q9H400 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIME1Q9H400 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIME1Q9H400 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIME1Q9H400 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIME1Q9H400 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIME1Q9H400 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIME1Q9H400 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIME1Q9H400 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIME1Q9H400 AC137630.3-201ENST00000607245 391 ntBASIC20.64■□□□□ 0.89
LIME1Q9H400 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIME1Q9H400 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.64■□□□□ 0.89
LIME1Q9H400 AC021242.3-201ENST00000607598 1377 ntBASIC20.63■□□□□ 0.89
LIME1Q9H400 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.63■□□□□ 0.89
LIME1Q9H400 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms