Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
CDT1Q9H211 THA1P-201ENST00000590384 1145 ntBASIC25.75■■□□□ 1.71
CDT1Q9H211 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CDT1Q9H211 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
CDT1Q9H211 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
CDT1Q9H211 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
CDT1Q9H211 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CDT1Q9H211 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CDT1Q9H211 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.74■■□□□ 1.71
CDT1Q9H211 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CDT1Q9H211 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CDT1Q9H211 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CDT1Q9H211 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CDT1Q9H211 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CDT1Q9H211 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CDT1Q9H211 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
CDT1Q9H211 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.72■■□□□ 1.71
CDT1Q9H211 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.72■■□□□ 1.71
CDT1Q9H211 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.72■■□□□ 1.71
CDT1Q9H211 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CDT1Q9H211 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
CDT1Q9H211 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.72■■□□□ 1.71
CDT1Q9H211 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CDT1Q9H211 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
CDT1Q9H211 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
CDT1Q9H211 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC25.71■■□□□ 1.71
CDT1Q9H211 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
CDT1Q9H211 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC25.7■■□□□ 1.7
CDT1Q9H211 TRIR-205ENST00000592273 783 ntTSL 3 BASIC25.7■■□□□ 1.7
CDT1Q9H211 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CDT1Q9H211 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CDT1Q9H211 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CDT1Q9H211 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.69■■□□□ 1.7
CDT1Q9H211 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CDT1Q9H211 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CDT1Q9H211 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
CDT1Q9H211 RNF146-205ENST00000477776 762 ntTSL 3 BASIC25.69■■□□□ 1.7
CDT1Q9H211 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CDT1Q9H211 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.68■■□□□ 1.7
CDT1Q9H211 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CDT1Q9H211 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CDT1Q9H211 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CDT1Q9H211 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CDT1Q9H211 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CDT1Q9H211 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CDT1Q9H211 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CDT1Q9H211 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC25.67■■□□□ 1.7
CDT1Q9H211 AC011551.1-201ENST00000614101 683 ntBASIC25.67■■□□□ 1.7
CDT1Q9H211 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.67■■□□□ 1.7
CDT1Q9H211 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.67■■□□□ 1.7
CDT1Q9H211 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.66■■□□□ 1.7
CDT1Q9H211 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CDT1Q9H211 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CDT1Q9H211 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CDT1Q9H211 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.66■■□□□ 1.7
CDT1Q9H211 MIR4281-201ENST00000580852 62 ntBASIC25.66■■□□□ 1.7
CDT1Q9H211 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC25.66■■□□□ 1.7
CDT1Q9H211 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CDT1Q9H211 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDT1Q9H211 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDT1Q9H211 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
CDT1Q9H211 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
CDT1Q9H211 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
CDT1Q9H211 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC25.65■■□□□ 1.7
CDT1Q9H211 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
CDT1Q9H211 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDT1Q9H211 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CDT1Q9H211 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.63■■□□□ 1.69
CDT1Q9H211 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
CDT1Q9H211 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDT1Q9H211 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDT1Q9H211 HES6-204ENST00000409182 863 ntTSL 2 BASIC25.63■■□□□ 1.69
CDT1Q9H211 OR2A1-AS1-204ENST00000470435 602 ntBASIC25.63■■□□□ 1.69
CDT1Q9H211 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.63■■□□□ 1.69
CDT1Q9H211 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.63■■□□□ 1.69
CDT1Q9H211 SLC6A10P-202ENST00000431994 2058 ntBASIC25.63■■□□□ 1.69
CDT1Q9H211 CEBPA-AS1-201ENST00000592982 2198 ntBASIC25.63■■□□□ 1.69
CDT1Q9H211 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.63■■□□□ 1.69
CDT1Q9H211 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC25.63■■□□□ 1.69
CDT1Q9H211 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CDT1Q9H211 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.62■■□□□ 1.69
CDT1Q9H211 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.62■■□□□ 1.69
CDT1Q9H211 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.61■■□□□ 1.69
CDT1Q9H211 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CDT1Q9H211 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
CDT1Q9H211 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
CDT1Q9H211 AC239859.2-201ENST00000444165 318 ntBASIC25.61■■□□□ 1.69
CDT1Q9H211 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CDT1Q9H211 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CDT1Q9H211 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC25.6■■□□□ 1.69
CDT1Q9H211 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CDT1Q9H211 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC25.6■■□□□ 1.69
CDT1Q9H211 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC25.6■■□□□ 1.69
CDT1Q9H211 Z92544.1-202ENST00000571933 1220 ntBASIC25.6■■□□□ 1.69
CDT1Q9H211 AC137630.3-201ENST00000607245 391 ntBASIC25.6■■□□□ 1.69
CDT1Q9H211 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CDT1Q9H211 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CDT1Q9H211 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
CDT1Q9H211 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
CDT1Q9H211 AC090877.2-201ENST00000558441 1738 ntBASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms