Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.263e-6■■■■□ 23.7
DDX55Q8NHQ9 HERPUD1-208ENST00000563911 844 ntTSL 37.18□□□□□ -1.265e-16■■■■□ 23.7
DDX55Q8NHQ9 HERPUD1-213ENST00000568358 751 ntTSL 55.75□□□□□ -1.495e-16■■■■□ 23.7
DDX55Q8NHQ9 SEL1L-201ENST00000336735 7925 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.712e-6■■■■□ 23.7
DDX55Q8NHQ9 PTOV1-209ENST00000597793 1716 ntTSL 1 (best)22.78■■□□□ 1.245e-7■■■■□ 23.7
DDX55Q8NHQ9 PTOV1-216ENST00000601093 522 ntTSL 214.14□□□□□ -0.155e-7■■■■□ 23.7
DDX55Q8NHQ9 PCGF2-204ENST00000616199 3062 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.167e-7■■■■□ 23.6
DDX55Q8NHQ9 PCGF2-207ENST00000620225 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.467e-7■■■■□ 23.6
DDX55Q8NHQ9 H2AFZ-203ENST00000511319 1254 ntTSL 1 (best)35.67■■■■□ 3.37e-11■■■■□ 23.6
DDX55Q8NHQ9 H2AFZ-202ENST00000511203 1880 ntTSL 234.27■■■■□ 3.087e-11■■■■□ 23.6
DDX55Q8NHQ9 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.97e-11■■■■□ 23.6
DDX55Q8NHQ9 H2AFZ-204ENST00000511348 1843 ntTSL 1 (best)14.99□□□□□ -0.017e-11■■■■□ 23.6
DDX55Q8NHQ9 H2AFZ-206ENST00000529158 726 ntTSL 312.64□□□□□ -0.397e-11■■■■□ 23.6
DDX55Q8NHQ9 ORMDL3-203ENST00000579287 349 ntTSL 314.72□□□□□ -0.053e-14■■■■□ 23.6
DDX55Q8NHQ9 YPEL3-205ENST00000565110 575 ntTSL 523.67■■□□□ 1.382e-8■■■■□ 23.5
DDX55Q8NHQ9 YPEL3-210ENST00000568674 371 ntTSL 223.26■■□□□ 1.312e-8■■■■□ 23.5
DDX55Q8NHQ9 FIS1-208ENST00000480497 530 ntTSL 321.17■□□□□ 0.981e-11■■■■□ 23.5
DDX55Q8NHQ9 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC28.69■■■□□ 2.186e-7■■■■□ 23.4
DDX55Q8NHQ9 DHRSX-207ENST00000478825 679 ntTSL 227.86■■■□□ 2.056e-7■■■■□ 23.4
DDX55Q8NHQ9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.886e-7■■■■□ 23.4
DDX55Q8NHQ9 DHRSX-203ENST00000430536 490 ntTSL 226.62■■□□□ 1.856e-7■■■■□ 23.4
DDX55Q8NHQ9 DHRSX-202ENST00000412516 744 ntTSL 225.72■■□□□ 1.716e-7■■■■□ 23.4
DDX55Q8NHQ9 YDJC-205ENST00000468686 1423 ntTSL 1 (best)25.71■■□□□ 1.712e-11■■■■□ 23.4
DDX55Q8NHQ9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC24.76■■□□□ 1.551e-6■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.451e-6■■■■□ 23.4
DDX55Q8NHQ9 YDJC-207ENST00000482998 1388 ntTSL 523.66■■□□□ 1.382e-11■■■■□ 23.4
DDX55Q8NHQ9 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.22e-11■■■■□ 23.4
DDX55Q8NHQ9 YDJC-203ENST00000415762 1410 ntTSL 1 (best)22.32■■□□□ 1.162e-11■■■■□ 23.4
DDX55Q8NHQ9 YDJC-204ENST00000464015 1613 ntTSL 1 (best)22.32■■□□□ 1.162e-11■■■■□ 23.4
DDX55Q8NHQ9 YDJC-206ENST00000473985 1494 ntTSL 522.23■■□□□ 1.152e-11■■■■□ 23.4
DDX55Q8NHQ9 DHRSX-205ENST00000444280 797 ntTSL 221.1■□□□□ 0.976e-7■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC20.7■□□□□ 0.91e-6■■■■□ 23.4
DDX55Q8NHQ9 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.96e-7■■■■□ 23.4
DDX55Q8NHQ9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.886e-7■■■■□ 23.4
DDX55Q8NHQ9 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.46■□□□□ 0.872e-11■■■■□ 23.4
DDX55Q8NHQ9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.92■□□□□ 0.781e-6■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC19.18■□□□□ 0.661e-6■■■■□ 23.4
DDX55Q8NHQ9 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.626e-7■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.75■□□□□ 0.591e-6■■■■□ 23.4
DDX55Q8NHQ9 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.531e-6■■■■□ 23.4
DDX55Q8NHQ9 TRAPPC1-207ENST00000575639 561 ntTSL 218.06■□□□□ 0.486e-7■■■■□ 23.4
DDX55Q8NHQ9 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.471e-6■■■■□ 23.4
DDX55Q8NHQ9 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC17.8■□□□□ 0.446e-7■■■■□ 23.4
DDX55Q8NHQ9 PFAS-202ENST00000546020 2652 ntTSL 216.94■□□□□ 0.36e-7■■■■□ 23.4
DDX55Q8NHQ9 ZC3H4-205ENST00000601973 4895 ntAPPRIS ALT2 TSL 516.89■□□□□ 0.296e-7■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-204ENST00000506909 458 ntTSL 316.49■□□□□ 0.231e-6■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC16.11■□□□□ 0.171e-6■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.151e-6■■■■□ 23.4
DDX55Q8NHQ9 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.086e-7■■■■□ 23.4
DDX55Q8NHQ9 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.46■□□□□ 0.076e-7■■■■□ 23.4
DDX55Q8NHQ9 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.056e-7■■■■□ 23.4
DDX55Q8NHQ9 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.036e-7■■■■□ 23.4
DDX55Q8NHQ9 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.026e-7■■■■□ 23.4
DDX55Q8NHQ9 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC14.76□□□□□ -0.056e-7■■■■□ 23.4
DDX55Q8NHQ9 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.086e-7■■■■□ 23.4
DDX55Q8NHQ9 SMARCE1-214ENST00000578112 2384 ntTSL 514.15□□□□□ -0.146e-7■■■■□ 23.4
DDX55Q8NHQ9 TEP1-206ENST00000555727 7832 ntTSL 1 (best)13.41□□□□□ -0.266e-7■■■■□ 23.4
DDX55Q8NHQ9 TEP1-205ENST00000555008 6697 ntTSL 1 (best)12.5□□□□□ -0.416e-7■■■■□ 23.4
DDX55Q8NHQ9 SMARCE1-202ENST00000348513 5840 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.416e-7■■■■□ 23.4
DDX55Q8NHQ9 ZC3H4-202ENST00000594019 3259 ntTSL 212.21□□□□□ -0.456e-7■■■■□ 23.4
DDX55Q8NHQ9 TEP1-209ENST00000556935 7643 ntTSL 1 (best) BASIC11.97□□□□□ -0.496e-7■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-210ENST00000513582 3500 ntTSL 211.78□□□□□ -0.521e-6■■■■□ 23.4
DDX55Q8NHQ9 RAB18-201ENST00000356940 4886 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.566e-7■■■■□ 23.4
DDX55Q8NHQ9 TRAPPC1-202ENST00000540486 759 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.66e-7■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-209ENST00000512466 3763 ntTSL 211.07□□□□□ -0.641e-6■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-208ENST00000511482 878 ntTSL 510.96□□□□□ -0.651e-6■■■■□ 23.4
DDX55Q8NHQ9 CASP8-201ENST00000264274 2540 ntTSL 5 BASIC10.56□□□□□ -0.726e-7■■■■□ 23.4
DDX55Q8NHQ9 TRAPPC1-203ENST00000571739 648 ntTSL 310.53□□□□□ -0.726e-7■■■■□ 23.4
DDX55Q8NHQ9 SMARCE1-207ENST00000469334 2128 ntTSL 59.73□□□□□ -0.856e-7■■■■□ 23.4
DDX55Q8NHQ9 TCF7L2-216ENST00000534894 3778 ntTSL 1 (best) BASIC9.44□□□□□ -0.96e-7■■■■□ 23.4
DDX55Q8NHQ9 DHRSX-204ENST00000441131 539 ntTSL 29.42□□□□□ -0.96e-7■■■■□ 23.4
DDX55Q8NHQ9 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.916e-7■■■■□ 23.4
DDX55Q8NHQ9 CASP8-205ENST00000358485 2930 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.956e-7■■■■□ 23.4
DDX55Q8NHQ9 PDCD6-205ENST00000507473 486 ntTSL 38.83□□□□□ -11e-6■■■■□ 23.4
DDX55Q8NHQ9 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.046e-7■■■■□ 23.4
DDX55Q8NHQ9 ODAM-205ENST00000514097 680 ntTSL 58.5□□□□□ -1.056e-7■■■■□ 23.4
DDX55Q8NHQ9 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.16e-7■■■■□ 23.4
DDX55Q8NHQ9 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.116e-7■■■■□ 23.4
DDX55Q8NHQ9 ODAM-204ENST00000510847 605 ntTSL 37.8□□□□□ -1.166e-7■■■■□ 23.4
DDX55Q8NHQ9 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.76□□□□□ -1.176e-7■■■■□ 23.4
DDX55Q8NHQ9 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.276e-7■■■■□ 23.4
DDX55Q8NHQ9 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC7.1□□□□□ -1.276e-7■■■■□ 23.4
DDX55Q8NHQ9 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.86□□□□□ -1.316e-7■■■■□ 23.4
DDX55Q8NHQ9 XRCC5-207ENST00000471649 610 ntTSL 26.49□□□□□ -1.376e-7■■■■□ 23.4
DDX55Q8NHQ9 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC6.18□□□□□ -1.426e-7■■■■□ 23.4
DDX55Q8NHQ9 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.07□□□□□ -1.446e-7■■■■□ 23.4
DDX55Q8NHQ9 RIF1-207ENST00000454583 3552 ntTSL 25.94□□□□□ -1.466e-7■■■■□ 23.4
DDX55Q8NHQ9 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.67□□□□□ -1.56e-7■■■■□ 23.4
DDX55Q8NHQ9 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.566e-7■■■■□ 23.4
DDX55Q8NHQ9 DKK1-203ENST00000476752 544 ntTSL 25.19□□□□□ -1.586e-7■■■■□ 23.4
DDX55Q8NHQ9 ODAM-203ENST00000510709 780 ntTSL 54.27□□□□□ -1.736e-7■■■■□ 23.4
DDX55Q8NHQ9 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.243e-8■■■■□ 23.4
DDX55Q8NHQ9 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.813e-8■■■■□ 23.4
DDX55Q8NHQ9 ELP5-205ENST00000570322 1083 ntTSL 320.04■□□□□ 0.83e-8■■■■□ 23.4
DDX55Q8NHQ9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.6■□□□□ 0.733e-8■■■■□ 23.4
DDX55Q8NHQ9 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.46■□□□□ 0.553e-8■■■■□ 23.4
DDX55Q8NHQ9 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.333e-8■■■■□ 23.4
DDX55Q8NHQ9 RNU6-25P-201ENST00000383873 107 ntBASIC3.66□□□□□ -1.826e-9■■■■□ 23.4
DDX55Q8NHQ9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.07■□□□□ 0.88e-24■■■■□ 23.3
DDX55Q8NHQ9 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.78e-24■■■■□ 23.3
Retrieved 100 of 15,504 protein–RNA pairs in 121.2 ms