RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-208ENST00000563911 AEBP2Q6ZN18 517 aaPredicted RBP24.61■■□□□ 1.53
HERPUD1-208ENST00000563911 CHIC1Q5VXU3 224 aa24.46■■□□□ 1.51
HERPUD1-208ENST00000563911 PHF23Q9BUL5 403 aaPredicted RBP21.56■■□□□ 1.04
HERPUD1-208ENST00000563911 SENP3Q9H4L4 574 aaPredicted RBP20.83■□□□□ 0.93
HERPUD1-208ENST00000563911 PLPPR3Q6T4P5 718 aa20.08■□□□□ 0.81
HERPUD1-208ENST00000563911 FOXD1Q16676 465 aa19.27■□□□□ 0.68
HERPUD1-208ENST00000563911 ADRA2BP18089 450 aa18.93■□□□□ 0.62
HERPUD1-208ENST00000563911 PPP6R1Q9UPN7 881 aa18.9■□□□□ 0.62
HERPUD1-208ENST00000563911 PIAS4Q8N2W9 510 aaPredicted RBP18.31■□□□□ 0.52
HERPUD1-208ENST00000563911 KCNA4P22459 653 aa17.85■□□□□ 0.45
HERPUD1-208ENST00000563911 PPP4R3CPQ6ZMV5 832 aa17.76■□□□□ 0.43
HERPUD1-208ENST00000563911 MSH5O43196 834 aa17.6■□□□□ 0.41
HERPUD1-208ENST00000563911 NCBP3Q53F19 620 aaKnown RBP17.44■□□□□ 0.38
HERPUD1-208ENST00000563911 SCAF1Q9H7N4 1312 aaKnown RBP17.33■□□□□ 0.36
HERPUD1-208ENST00000563911 NPM3O75607 178 aaKnown RBP17.16■□□□□ 0.34
HERPUD1-208ENST00000563911 CNKSR2Q8WXI2 1034 aa17.16■□□□□ 0.34
HERPUD1-208ENST00000563911 EHMT2Q96KQ7 1210 aa17.14■□□□□ 0.33
HERPUD1-208ENST00000563911 SLC4A1APQ9BWU0 796 aaKnown RBP17.09■□□□□ 0.33
HERPUD1-208ENST00000563911 MAPK8IP2Q13387 824 aaPredicted RBP17.05■□□□□ 0.32
HERPUD1-208ENST00000563911 RNF216Q9NWF9 866 aaPredicted RBP16.7■□□□□ 0.26
HERPUD1-208ENST00000563911 CSRNP3Q8WYN3 585 aa16.69■□□□□ 0.26
HERPUD1-208ENST00000563911 DMRT2Q9Y5R5 561 aa16.69■□□□□ 0.26
HERPUD1-208ENST00000563911 DNAJC5BQ9UF47 199 aa16.51■□□□□ 0.23
HERPUD1-208ENST00000563911 HOXD11P31277 338 aaPredicted RBP16.5■□□□□ 0.23
HERPUD1-208ENST00000563911 ZBTB22O15209 634 aa16.41■□□□□ 0.22
HERPUD1-208ENST00000563911 FOXD4L1Q9NU39 408 aa16.29■□□□□ 0.2
HERPUD1-208ENST00000563911 SLC4A2P04920 1241 aa16.08■□□□□ 0.16
HERPUD1-208ENST00000563911 DCAF8L1A6NGE4 600 aa16.03■□□□□ 0.16
HERPUD1-208ENST00000563911 MYCNP04198 464 aaPredicted RBP15.84■□□□□ 0.13
HERPUD1-208ENST00000563911 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.8■□□□□ 0.124e-6■□□□□ 11.1
HERPUD1-208ENST00000563911 ATXN8OSP0DMR3 200 aa15.67■□□□□ 0.1
HERPUD1-208ENST00000563911 U3KPZ7 1027 aaPredicted RBP15.54■□□□□ 0.08
HERPUD1-208ENST00000563911 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.51■□□□□ 0.07
HERPUD1-208ENST00000563911 HNRNPUL2Q1KMD3 747 aaKnown RBP15.51■□□□□ 0.07
HERPUD1-208ENST00000563911 SAMD1Q6SPF0 538 aaPredicted RBP15.48■□□□□ 0.07
HERPUD1-208ENST00000563911 POTEDQ86YR6 584 aa15.48■□□□□ 0.07
HERPUD1-208ENST00000563911 ATF5Q9Y2D1 282 aaPredicted RBP15.39■□□□□ 0.05
HERPUD1-208ENST00000563911 APLP2Q06481 763 aa15.25■□□□□ 0.03
HERPUD1-208ENST00000563911 ZNF219Q9P2Y4 722 aaPredicted RBP15.12■□□□□ 0.01
HERPUD1-208ENST00000563911 RNF39Q9H2S5 420 aa15.11■□□□□ 0.01
HERPUD1-208ENST00000563911 FKBP8Q14318 412 aa15.1■□□□□ 0.01
HERPUD1-208ENST00000563911 SPINK5Q9NQ38 1064 aaPredicted RBP15□□□□□ -0.01
HERPUD1-208ENST00000563911 TRHP20396 242 aaPredicted RBP14.99□□□□□ -0.01
HERPUD1-208ENST00000563911 C1QBPQ07021 282 aaKnown RBP14.97□□□□□ -0.01
HERPUD1-208ENST00000563911 CAPN15O75808 1086 aa14.95□□□□□ -0.02
HERPUD1-208ENST00000563911 POLA2Q14181 598 aa14.84□□□□□ -0.03
HERPUD1-208ENST00000563911 FBLN2P98095 1184 aa14.75□□□□□ -0.05
HERPUD1-208ENST00000563911 MKRN4PQ13434 485 aaPredicted RBP14.73□□□□□ -0.05
HERPUD1-208ENST00000563911 ABCB7O75027 752 aa14.7□□□□□ -0.06
HERPUD1-208ENST00000563911 SPDYE4A6NLX3 237 aa14.65□□□□□ -0.06
HERPUD1-208ENST00000563911 ZBTB12Q9Y330 459 aaPredicted RBP14.59□□□□□ -0.07
HERPUD1-208ENST00000563911 DSG3P32926 999 aa14.55□□□□□ -0.08
HERPUD1-208ENST00000563911 AMER1Q5JTC6 1135 aaPredicted RBP14.51□□□□□ -0.09
HERPUD1-208ENST00000563911 RTN4Q9NQC3 1192 aaKnown RBP14.5□□□□□ -0.09
HERPUD1-208ENST00000563911 NISCHQ9Y2I1 1504 aa14.46□□□□□ -0.1
HERPUD1-208ENST00000563911 CACNB1Q02641 598 aaPredicted RBP14.45□□□□□ -0.1
HERPUD1-208ENST00000563911 FBXO3Q9UK99 471 aa14.44□□□□□ -0.1
HERPUD1-208ENST00000563911 PROM2Q8N271 834 aa14.39□□□□□ -0.11
HERPUD1-208ENST00000563911 OSCARQ8IYS5 282 aa14.29□□□□□ -0.12
HERPUD1-208ENST00000563911 ZNF692Q9BU19 519 aaPredicted RBP14.29□□□□□ -0.12
HERPUD1-208ENST00000563911 SPDYE2BA6NHP3 402 aa14.22□□□□□ -0.13
HERPUD1-208ENST00000563911 SPDYE6P0CI01 402 aa14.22□□□□□ -0.13
HERPUD1-208ENST00000563911 SPDYE2Q495Y8 402 aa14.22□□□□□ -0.13
HERPUD1-208ENST00000563911 VASPP50552 380 aaPredicted RBP14.21□□□□□ -0.13
HERPUD1-208ENST00000563911 SSUH2Q9Y2M2 353 aa14.14□□□□□ -0.15
HERPUD1-208ENST00000563911 PABPN1Q86U42 306 aaKnown RBP eCLIP14.1□□□□□ -0.15
HERPUD1-208ENST00000563911 IFNLR1Q8IU57 520 aaPredicted RBP14.05□□□□□ -0.16
HERPUD1-208ENST00000563911 STAG3Q9UJ98 1225 aa14.02□□□□□ -0.17
HERPUD1-208ENST00000563911 KLHL34Q8N239 644 aa13.93□□□□□ -0.18
HERPUD1-208ENST00000563911 PLCD3Q8N3E9 789 aa13.91□□□□□ -0.18
HERPUD1-208ENST00000563911 MIER1Q8N108 512 aa13.88□□□□□ -0.19
HERPUD1-208ENST00000563911 RBM42Q9BTD8 480 aaKnown RBP13.86□□□□□ -0.19
HERPUD1-208ENST00000563911 SPOCK2Q92563 424 aa13.83□□□□□ -0.2
HERPUD1-208ENST00000563911 SLC24A1O60721 1099 aa13.82□□□□□ -0.2
HERPUD1-208ENST00000563911 PLEKHG5O94827 1062 aa13.78□□□□□ -0.2
HERPUD1-208ENST00000563911 AKT1S1Q96B36 256 aa13.78□□□□□ -0.2
HERPUD1-208ENST00000563911 PKD2Q13563 968 aa13.74□□□□□ -0.21
HERPUD1-208ENST00000563911 SPDYE1Q8NFV5 336 aaPredicted RBP13.72□□□□□ -0.21
HERPUD1-208ENST00000563911 DCAF8L2P0C7V8 631 aa13.7□□□□□ -0.22
HERPUD1-208ENST00000563911 ZBTB47Q9UFB7 747 aaPredicted RBP13.69□□□□□ -0.22
HERPUD1-208ENST00000563911 CLEC11AQ9Y240 323 aa13.68□□□□□ -0.22
HERPUD1-208ENST00000563911 REM2Q8IYK8 340 aaPredicted RBP13.66□□□□□ -0.22
HERPUD1-208ENST00000563911 ECM2O94769 699 aaPredicted RBP13.61□□□□□ -0.23
HERPUD1-208ENST00000563911 PRR29P0C7W0 189 aa13.61□□□□□ -0.23
HERPUD1-208ENST00000563911 CIZ1Q9ULV3 898 aaPredicted RBP13.57□□□□□ -0.24
HERPUD1-208ENST00000563911 PITPNM1O00562 1244 aa13.49□□□□□ -0.25
HERPUD1-208ENST00000563911 CREBZFQ9NS37 354 aa13.49□□□□□ -0.25
HERPUD1-208ENST00000563911 RGL2O15211 777 aa13.44□□□□□ -0.26
HERPUD1-208ENST00000563911 ABCC9O60706 1549 aa13.44□□□□□ -0.26
HERPUD1-208ENST00000563911 NUBP1P53384 320 aa13.42□□□□□ -0.26
HERPUD1-208ENST00000563911 PLCB2Q00722 1185 aa13.42□□□□□ -0.26
HERPUD1-208ENST00000563911 GSE1Q14687 1217 aa13.42□□□□□ -0.26
HERPUD1-208ENST00000563911 DCAF8Q5TAQ9 597 aa13.4□□□□□ -0.26
HERPUD1-208ENST00000563911 TRIM41Q8WV44 630 aa13.39□□□□□ -0.27
HERPUD1-208ENST00000563911 MNX1P50219 401 aaPredicted RBP13.38□□□□□ -0.27
HERPUD1-208ENST00000563911 FAM212AQ96EL1 285 aa13.33□□□□□ -0.28
HERPUD1-208ENST00000563911 NPM1P06748 294 aaKnown RBP eCLIP13.32□□□□□ -0.28
HERPUD1-208ENST00000563911 BBXQ8WY36 941 aaPredicted RBP13.31□□□□□ -0.28
HERPUD1-208ENST00000563911 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.3□□□□□ -0.28
HERPUD1-208ENST00000563911 RASEFQ8IZ41 740 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms