RNA–Protein interactions for RNA: ENST00000454583.6

RIF1-207, Transcript of replication timing regulatory factor 1, humanhuman

TSL 2

Gene RIF1, Length 3,552 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-207ENST00000454583 NISCHQ9Y2I1 1504 aa12.88□□□□□ -0.35
RIF1-207ENST00000454583 CCDC180Q9P1Z9 1646 aa11.63□□□□□ -0.55
RIF1-207ENST00000454583 CHIC1Q5VXU3 224 aa11.25□□□□□ -0.61
RIF1-207ENST00000454583 AEBP2Q6ZN18 517 aaPredicted RBP11.18□□□□□ -0.62
RIF1-207ENST00000454583 DCAF1Q9Y4B6 1507 aa10.92□□□□□ -0.66
RIF1-207ENST00000454583 ZCCHC6Q5VYS8 1495 aaKnown RBP10.89□□□□□ -0.67
RIF1-207ENST00000454583 MYO15BQ96JP2 1530 aa10.88□□□□□ -0.67
RIF1-207ENST00000454583 UNC13AQ9UPW8 1703 aa10.77□□□□□ -0.69
RIF1-207ENST00000454583 NACADO15069 1562 aa10.6□□□□□ -0.71
RIF1-207ENST00000454583 BICRAQ9NZM4 1560 aa10.47□□□□□ -0.73
RIF1-207ENST00000454583 RB1CC1Q8TDY2 1594 aa10.44□□□□□ -0.74
RIF1-207ENST00000454583 ABCC9O60706 1549 aa10.41□□□□□ -0.74
RIF1-207ENST00000454583 SHROOM4Q9ULL8 1493 aa10.29□□□□□ -0.76
RIF1-207ENST00000454583 SCRIBQ14160 1630 aa10.21□□□□□ -0.78
RIF1-207ENST00000454583 PEG3Q9GZU2 1588 aa10.15□□□□□ -0.78
RIF1-207ENST00000454583 SMARCA4P51532 1647 aa10.01□□□□□ -0.81
RIF1-207ENST00000454583 EIF4G1Q04637 1599 aaKnown RBP9.97□□□□□ -0.81
RIF1-207ENST00000454583 BAZ1AQ9NRL2 1556 aaPredicted RBP9.91□□□□□ -0.82
RIF1-207ENST00000454583 MROH2BQ7Z745 1585 aa9.9□□□□□ -0.82
RIF1-207ENST00000454583 CECR2Q9BXF3 1484 aa9.9□□□□□ -0.82
RIF1-207ENST00000454583 WIZO95785 1651 aa9.88□□□□□ -0.83
RIF1-207ENST00000454583 PRDM2Q13029 1718 aa9.87□□□□□ -0.83
RIF1-207ENST00000454583 HMGXB3Q12766 1538 aa9.85□□□□□ -0.83
RIF1-207ENST00000454583 SMARCA2P51531 1590 aa9.83□□□□□ -0.84
RIF1-207ENST00000454583 PHF23Q9BUL5 403 aaPredicted RBP9.81□□□□□ -0.84
RIF1-207ENST00000454583 RSF1Q96T23 1441 aaPredicted RBP9.8□□□□□ -0.84
RIF1-207ENST00000454583 CC2D2AQ9P2K1 1620 aa9.79□□□□□ -0.84
RIF1-207ENST00000454583 TOP2AP11388 1531 aaKnown RBP9.77□□□□□ -0.85
RIF1-207ENST00000454583 NCAPD3P42695 1498 aa9.73□□□□□ -0.85
RIF1-207ENST00000454583 ATAD2BQ9ULI0 1458 aa9.72□□□□□ -0.85
RIF1-207ENST00000454583 SENP3Q9H4L4 574 aaPredicted RBP9.57□□□□□ -0.88
RIF1-207ENST00000454583 WDR97A6NE52 1622 aa9.53□□□□□ -0.88
RIF1-207ENST00000454583 PABPN1Q86U42 306 aaKnown RBP eCLIP9.53□□□□□ -0.88
RIF1-207ENST00000454583 CCDC88BA6NC98 1476 aa9.52□□□□□ -0.89
RIF1-207ENST00000454583 BIVM-ERCC5R4GMW8 1640 aa9.51□□□□□ -0.89
RIF1-207ENST00000454583 KIF21AQ7Z4S6 1674 aa9.49□□□□□ -0.89
RIF1-207ENST00000454583 LAMC3Q9Y6N6 1575 aa9.47□□□□□ -0.89
RIF1-207ENST00000454583 BAZ1BQ9UIG0 1483 aaKnown RBP9.47□□□□□ -0.89
RIF1-207ENST00000454583 THOC2Q8NI27 1593 aaKnown RBP9.47□□□□□ -0.89
RIF1-207ENST00000454583 CFTRP13569 1480 aa9.46□□□□□ -0.9
RIF1-207ENST00000454583 DCAF8L2P0C7V8 631 aa9.45□□□□□ -0.9
RIF1-207ENST00000454583 DNAJC5BQ9UF47 199 aa9.42□□□□□ -0.9
RIF1-207ENST00000454583 TOP2BQ02880 1626 aa9.37□□□□□ -0.91
RIF1-207ENST00000454583 SYNJ1O43426 1573 aa9.35□□□□□ -0.91
RIF1-207ENST00000454583 WDR62O43379 1518 aa9.34□□□□□ -0.91
RIF1-207ENST00000454583 TARBP1Q13395 1621 aaKnown RBP9.33□□□□□ -0.92
RIF1-207ENST00000454583 CUX1P39880 1505 aa9.3□□□□□ -0.92
RIF1-207ENST00000454583 NESP48681 1621 aa9.28□□□□□ -0.92
RIF1-207ENST00000454583 ABCA5Q8WWZ7 1642 aa9.27□□□□□ -0.93
RIF1-207ENST00000454583 DNMBPQ6XZF7 1577 aa9.26□□□□□ -0.93
RIF1-207ENST00000454583 URB2Q14146 1524 aaKnown RBP9.25□□□□□ -0.93
RIF1-207ENST00000454583 CADPSQ9ULU8 1353 aa9.23□□□□□ -0.93
RIF1-207ENST00000454583 ABCC8Q09428 1581 aa9.23□□□□□ -0.93
RIF1-207ENST00000454583 PBRM1Q86U86 1689 aa9.21□□□□□ -0.94
RIF1-207ENST00000454583 CUX2O14529 1486 aa9.17□□□□□ -0.94
RIF1-207ENST00000454583 TOPBP1Q92547 1522 aa9.16□□□□□ -0.94
RIF1-207ENST00000454583 PLPPR3Q6T4P5 718 aa9.16□□□□□ -0.94
RIF1-207ENST00000454583 FANCD2Q9BXW9 1451 aa9.16□□□□□ -0.94
RIF1-207ENST00000454583 MRC2Q9UBG0 1479 aa9.11□□□□□ -0.95
RIF1-207ENST00000454583 ABCA10Q8WWZ4 1543 aa9.11□□□□□ -0.95
RIF1-207ENST00000454583 POLA1P09884 1462 aaPredicted RBP9.09□□□□□ -0.95
RIF1-207ENST00000454583 EIF4G3O43432 1585 aaKnown RBP9.09□□□□□ -0.95
RIF1-207ENST00000454583 CEP164Q9UPV0 1460 aa9.08□□□□□ -0.96
RIF1-207ENST00000454583 KIF21BO75037 1637 aa9.08□□□□□ -0.96
RIF1-207ENST00000454583 CUL7Q14999 1698 aa9.05□□□□□ -0.96
RIF1-207ENST00000454583 FGD5Q6ZNL6 1462 aa9.05□□□□□ -0.96
RIF1-207ENST00000454583 ADAMTS12P58397 1594 aa9.04□□□□□ -0.96
RIF1-207ENST00000454583 CTTNBP2Q8WZ74 1663 aa9.03□□□□□ -0.96
RIF1-207ENST00000454583 WRNQ14191 1432 aaPredicted RBP eCLIP9.03□□□□□ -0.96
RIF1-207ENST00000454583 SHROOM2Q13796 1616 aa9.03□□□□□ -0.96
RIF1-207ENST00000454583 ERICH3Q5RHP9 1530 aa9.03□□□□□ -0.96
RIF1-207ENST00000454583 PDS5BQ9NTI5 1447 aa9.02□□□□□ -0.97
RIF1-207ENST00000454583 RUSC2Q8N2Y8 1516 aa8.99□□□□□ -0.97
RIF1-207ENST00000454583 LRRIQ1Q96JM4 1722 aa8.99□□□□□ -0.97
RIF1-207ENST00000454583 CHD1O14646 1710 aa8.99□□□□□ -0.97
RIF1-207ENST00000454583 PRXQ9BXM0 1461 aa8.98□□□□□ -0.97
RIF1-207ENST00000454583 IFT140Q96RY7 1462 aa8.96□□□□□ -0.98
RIF1-207ENST00000454583 SAMD9Q5K651 1589 aa8.95□□□□□ -0.98
RIF1-207ENST00000454583 SUPT5HO00267 1087 aaKnown RBP8.95□□□□□ -0.98
RIF1-207ENST00000454583 CLASP1Q7Z460 1538 aa8.94□□□□□ -0.98
RIF1-207ENST00000454583 RAD54L2Q9Y4B4 1467 aa8.93□□□□□ -0.98
RIF1-207ENST00000454583 ZNF608Q9ULD9 1512 aaPredicted RBP8.93□□□□□ -0.98
RIF1-207ENST00000454583 CEP170Q5SW79 1584 aa8.92□□□□□ -0.98
RIF1-207ENST00000454583 SOGA1O94964 1423 aa8.91□□□□□ -0.98
RIF1-207ENST00000454583 EEA1Q15075 1411 aa8.86□□□□□ -0.99
RIF1-207ENST00000454583 MAGI1Q96QZ7 1491 aaPredicted RBP8.84□□□□□ -0.99
RIF1-207ENST00000454583 NUP160Q12769 1436 aa8.83□□□□□ -1
RIF1-207ENST00000454583 IGF1RP08069 1367 aa8.83□□□□□ -1
RIF1-207ENST00000454583 GAPVD1Q14C86 1478 aa8.81□□□□□ -1
RIF1-207ENST00000454583 UGGT2Q9NYU1 1516 aa8.8□□□□□ -1
RIF1-207ENST00000454583 GRIN2BQ13224 1484 aa8.79□□□□□ -1
RIF1-207ENST00000454583 RAPGEF2Q9Y4G8 1499 aa8.78□□□□□ -1
RIF1-207ENST00000454583 CFAP43Q8NDM7 1665 aa8.77□□□□□ -1
RIF1-207ENST00000454583 SYNJ2O15056 1496 aa8.77□□□□□ -1.01
RIF1-207ENST00000454583 GRIN2AQ12879 1464 aa8.76□□□□□ -1.01
RIF1-207ENST00000454583 SNAPC4Q5SXM2 1469 aa8.76□□□□□ -1.01
RIF1-207ENST00000454583 KIAA0556O60303 1618 aa8.75□□□□□ -1.01
RIF1-207ENST00000454583 ERCC6Q03468 1493 aa8.75□□□□□ -1.01
RIF1-207ENST00000454583 DISP1Q96F81 1524 aa8.75□□□□□ -1.01
RIF1-207ENST00000454583 AQRO60306 1485 aaKnown RBP eCLIP8.75□□□□□ -1.016e-7■■■■■ 29.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms