RNA–Protein interactions for RNA: ENST00000348513.10

SMARCE1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCE1, Length 5,840 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-202ENST00000348513 DCAF8L2P0C7V8 631 aa19.31■□□□□ 0.68
SMARCE1-202ENST00000348513 MYT1Q01538 1121 aa19.02■□□□□ 0.63
SMARCE1-202ENST00000348513 PELP1Q8IZL8 1130 aaKnown RBP18.89■□□□□ 0.62
SMARCE1-202ENST00000348513 SUPT5HO00267 1087 aaKnown RBP18.17■□□□□ 0.5
SMARCE1-202ENST00000348513 NISCHQ9Y2I1 1504 aa17.96■□□□□ 0.47
SMARCE1-202ENST00000348513 SHROOM4Q9ULL8 1493 aa17.94■□□□□ 0.46
SMARCE1-202ENST00000348513 EHMT2Q96KQ7 1210 aa17.85■□□□□ 0.45
SMARCE1-202ENST00000348513 TTBK1Q5TCY1 1321 aaPredicted RBP17.6■□□□□ 0.41
SMARCE1-202ENST00000348513 ERICH6Q7L0X2 663 aa17.36■□□□□ 0.37
SMARCE1-202ENST00000348513 CENPBP07199 599 aaPredicted RBP17.24■□□□□ 0.35
SMARCE1-202ENST00000348513 FAM9AQ8IZU1 332 aaPredicted RBP17.22■□□□□ 0.35
SMARCE1-202ENST00000348513 APLP2Q06481 763 aa17.16■□□□□ 0.34
SMARCE1-202ENST00000348513 RANGAP1P46060 587 aaPredicted RBP17.04■□□□□ 0.32
SMARCE1-202ENST00000348513 CCER1Q8TC90 406 aaPredicted RBP17.02■□□□□ 0.31
SMARCE1-202ENST00000348513 PCGF6Q9BYE7 350 aa16.83■□□□□ 0.28
SMARCE1-202ENST00000348513 ATP1B4Q9UN42 357 aaPredicted RBP16.82■□□□□ 0.28
SMARCE1-202ENST00000348513 ZEB1P37275 1124 aaPredicted RBP16.79■□□□□ 0.28
SMARCE1-202ENST00000348513 TRIM41Q8WV44 630 aa16.72■□□□□ 0.27
SMARCE1-202ENST00000348513 HRCP23327 699 aa16.67■□□□□ 0.26
SMARCE1-202ENST00000348513 UBTFP17480 764 aaKnown RBP16.6■□□□□ 0.25
SMARCE1-202ENST00000348513 YTHDC1Q96MU7 727 aaKnown RBP16.59■□□□□ 0.25
SMARCE1-202ENST00000348513 PPARGC1BQ86YN6 1023 aaKnown RBP16.48■□□□□ 0.23
SMARCE1-202ENST00000348513 NEFLP07196 543 aa16.34■□□□□ 0.21
SMARCE1-202ENST00000348513 GLIPR1L2Q4G1C9 344 aa16.22■□□□□ 0.19
SMARCE1-202ENST00000348513 ITGAEP38570 1179 aa16.2■□□□□ 0.18
SMARCE1-202ENST00000348513 MYT1LQ9UL68 1186 aa16.2■□□□□ 0.18
SMARCE1-202ENST00000348513 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.2■□□□□ 0.18
SMARCE1-202ENST00000348513 HNRNPUL2Q1KMD3 747 aaKnown RBP16.2■□□□□ 0.18
SMARCE1-202ENST00000348513 RTL5Q5HYW3 569 aaPredicted RBP16.19■□□□□ 0.18
SMARCE1-202ENST00000348513 GTF3C3Q9Y5Q9 886 aa16.17■□□□□ 0.18
SMARCE1-202ENST00000348513 BCL11AQ9H165 835 aa16.15■□□□□ 0.18
SMARCE1-202ENST00000348513 POLR3GLQ9BT43 218 aa16.08■□□□□ 0.17
SMARCE1-202ENST00000348513 LOC105371045A0A1W2PR82 267 aa16.06■□□□□ 0.16
SMARCE1-202ENST00000348513 CHIC1Q5VXU3 224 aa16.04■□□□□ 0.16
SMARCE1-202ENST00000348513 CNGB1Q14028 1251 aaPredicted RBP16.01■□□□□ 0.15
SMARCE1-202ENST00000348513 EIF5BO60841 1220 aaKnown RBP16.01■□□□□ 0.15
SMARCE1-202ENST00000348513 SLC24A1O60721 1099 aa15.99■□□□□ 0.15
SMARCE1-202ENST00000348513 ACIN1Q9UKV3 1341 aaKnown RBP15.98■□□□□ 0.15
SMARCE1-202ENST00000348513 TRIM26Q12899 539 aaPredicted RBP15.97■□□□□ 0.15
SMARCE1-202ENST00000348513 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.14
SMARCE1-202ENST00000348513 DAXXQ9UER7 740 aaPredicted RBP15.88■□□□□ 0.13
SMARCE1-202ENST00000348513 SCAF1Q9H7N4 1312 aaKnown RBP15.87■□□□□ 0.13
SMARCE1-202ENST00000348513 ABCC9O60706 1549 aa15.84■□□□□ 0.13
SMARCE1-202ENST00000348513 ANP32EQ9BTT0 268 aa15.81■□□□□ 0.12
SMARCE1-202ENST00000348513 SLC4A1APQ9BWU0 796 aaKnown RBP15.81■□□□□ 0.12
SMARCE1-202ENST00000348513 DIEXFQ68CQ4 756 aaKnown RBP15.73■□□□□ 0.11
SMARCE1-202ENST00000348513 FAM50AQ14320 339 aaKnown RBP15.72■□□□□ 0.11
SMARCE1-202ENST00000348513 PRKCSHP14314 528 aaPredicted RBP15.71■□□□□ 0.11
SMARCE1-202ENST00000348513 TRIM52Q96A61 297 aa15.63■□□□□ 0.09
SMARCE1-202ENST00000348513 FBLN2P98095 1184 aa15.62■□□□□ 0.09
SMARCE1-202ENST00000348513 ZNF316A6NFI3 1004 aaPredicted RBP15.6■□□□□ 0.09
SMARCE1-202ENST00000348513 CLSPNQ9HAW4 1339 aa15.59■□□□□ 0.09
SMARCE1-202ENST00000348513 NEUROD1Q13562 356 aa15.58■□□□□ 0.08
SMARCE1-202ENST00000348513 CDK11AQ9UQ88 783 aaPredicted RBP15.56■□□□□ 0.08
SMARCE1-202ENST00000348513 ZNF326Q5BKZ1 582 aaKnown RBP15.51■□□□□ 0.07
SMARCE1-202ENST00000348513 ARID3CA6NKF2 412 aa15.51■□□□□ 0.07
SMARCE1-202ENST00000348513 BCANQ96GW7 911 aa15.5■□□□□ 0.07
SMARCE1-202ENST00000348513 P3H3Q8IVL6 736 aa15.45■□□□□ 0.06
SMARCE1-202ENST00000348513 ANP32AP39687 249 aaKnown RBP15.35■□□□□ 0.05
SMARCE1-202ENST00000348513 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
SMARCE1-202ENST00000348513 NBR1Q14596 966 aa15.28■□□□□ 0.04
SMARCE1-202ENST00000348513 PODXL2Q9NZ53 605 aa15.23■□□□□ 0.03
SMARCE1-202ENST00000348513 ANP32CO43423 234 aa15.23■□□□□ 0.03
SMARCE1-202ENST00000348513 TNNT2P45379 298 aaPredicted RBP15.2■□□□□ 0.02
SMARCE1-202ENST00000348513 PLPPR3Q6T4P5 718 aa15.19■□□□□ 0.02
SMARCE1-202ENST00000348513 RTN4Q9NQC3 1192 aaKnown RBP15.17■□□□□ 0.02
SMARCE1-202ENST00000348513 CSRNP3Q8WYN3 585 aa15.17■□□□□ 0.02
SMARCE1-202ENST00000348513 SCRIBQ14160 1630 aa15.15■□□□□ 0.02
SMARCE1-202ENST00000348513 ERICH6BQ5W0A0 696 aa15.14■□□□□ 0.01
SMARCE1-202ENST00000348513 CANXP27824 592 aaKnown RBP15.12■□□□□ 0.01
SMARCE1-202ENST00000348513 PKNOX2Q96KN3 472 aa15.12■□□□□ 0.01
SMARCE1-202ENST00000348513 DEKP35659 375 aaKnown RBP15.11■□□□□ 0.01
SMARCE1-202ENST00000348513 ZBTB47Q9UFB7 747 aaPredicted RBP15.11■□□□□ 0.01
SMARCE1-202ENST00000348513 CDK11BP21127 795 aaKnown RBP15.1■□□□□ 0.01
SMARCE1-202ENST00000348513 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.1■□□□□ 0.01
SMARCE1-202ENST00000348513 NCLP19338 710 aaKnown RBP15.09■□□□□ 0.01
SMARCE1-202ENST00000348513 CHGAP10645 457 aaKnown RBP15.08■□□□□ 0
SMARCE1-202ENST00000348513 FKBP8Q14318 412 aa15.07■□□□□ 0
SMARCE1-202ENST00000348513 ESF1Q9H501 851 aaKnown RBP15.04■□□□□ -0
SMARCE1-202ENST00000348513 NEFMP07197 916 aa15.03■□□□□ -0
SMARCE1-202ENST00000348513 ANP32BQ92688 251 aaKnown RBP15.01□□□□□ -0.01
SMARCE1-202ENST00000348513 NAP1L5Q96NT1 182 aaPredicted RBP15□□□□□ -0.01
SMARCE1-202ENST00000348513 STAG3Q9UJ98 1225 aa15□□□□□ -0.01
SMARCE1-202ENST00000348513 CCDC136Q96JN2 1154 aa14.98□□□□□ -0.01
SMARCE1-202ENST00000348513 NPM2Q86SE8 214 aaKnown RBP14.97□□□□□ -0.01
SMARCE1-202ENST00000348513 CHIC2Q9UKJ5 165 aa14.97□□□□□ -0.01
SMARCE1-202ENST00000348513 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.96□□□□□ -0.012e-15■■■□□ 14.6
SMARCE1-202ENST00000348513 TRIM44Q96DX7 344 aaPredicted RBP14.95□□□□□ -0.02
SMARCE1-202ENST00000348513 NPM1P06748 294 aaKnown RBP eCLIP14.94□□□□□ -0.02
SMARCE1-202ENST00000348513 SENP3Q9H4L4 574 aaPredicted RBP14.9□□□□□ -0.02
SMARCE1-202ENST00000348513 TONSLQ96HA7 1378 aa14.9□□□□□ -0.02
SMARCE1-202ENST00000348513 VSIG10Q8N0Z9 540 aa14.9□□□□□ -0.02
SMARCE1-202ENST00000348513 SALL2Q9Y467 1007 aaPredicted RBP14.89□□□□□ -0.03
SMARCE1-202ENST00000348513 HSP90AA1P07900 732 aaKnown RBP14.89□□□□□ -0.03
SMARCE1-202ENST00000348513 A0A0U1RQG5 324 aaPredicted RBP14.86□□□□□ -0.03
SMARCE1-202ENST00000348513 FAM9BQ8IZU0 186 aa14.84□□□□□ -0.03
SMARCE1-202ENST00000348513 DDX10Q13206 875 aaKnown RBP14.84□□□□□ -0.03
SMARCE1-202ENST00000348513 KDM2AQ9Y2K7 1162 aa14.83□□□□□ -0.04
SMARCE1-202ENST00000348513 RSPH6AQ9H0K4 717 aa14.81□□□□□ -0.04
SMARCE1-202ENST00000348513 CHMP7Q8WUX9 453 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms