Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SYNE1Q8NF91 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 MIR4281-201ENST00000580852 62 ntBASIC7.2□□□□□ -1.26
SYNE1Q8NF91 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 KRT18P24-201ENST00000344739 1156 ntBASIC7.2□□□□□ -1.26
SYNE1Q8NF91 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SYNE1Q8NF91 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 RPP21-222ENST00000433076 577 ntTSL 2 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 RALB-208ENST00000631312 311 ntTSL 5 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 SRR-208ENST00000576848 588 ntTSL 4 BASIC7.19□□□□□ -1.26
SYNE1Q8NF91 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 ZNRF2P3-201ENST00000424200 374 ntBASIC7.18□□□□□ -1.26
SYNE1Q8NF91 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
SYNE1Q8NF91 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC7.18□□□□□ -1.26
SYNE1Q8NF91 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 MIR3621-201ENST00000580529 85 ntBASIC7.17□□□□□ -1.26
SYNE1Q8NF91 MIR4466-201ENST00000606121 54 ntBASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms