Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.46■■□□□ 1.51
SLC44A3Q8N4M1 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SLC44A3Q8N4M1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
SLC44A3Q8N4M1 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
SLC44A3Q8N4M1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
SLC44A3Q8N4M1 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC24.45■■□□□ 1.51
SLC44A3Q8N4M1 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SLC44A3Q8N4M1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24.45■■□□□ 1.5
SLC44A3Q8N4M1 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
SLC44A3Q8N4M1 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
SLC44A3Q8N4M1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SLC44A3Q8N4M1 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
SLC44A3Q8N4M1 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SLC44A3Q8N4M1 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC24.44■■□□□ 1.5
SLC44A3Q8N4M1 AC092666.2-201ENST00000613287 246 ntBASIC24.44■■□□□ 1.5
SLC44A3Q8N4M1 AF131216.4-201ENST00000638924 1588 ntBASIC24.44■■□□□ 1.5
SLC44A3Q8N4M1 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SLC44A3Q8N4M1 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SLC44A3Q8N4M1 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SLC44A3Q8N4M1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC24.43■■□□□ 1.5
SLC44A3Q8N4M1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
SLC44A3Q8N4M1 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SLC44A3Q8N4M1 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
SLC44A3Q8N4M1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC24.43■■□□□ 1.5
SLC44A3Q8N4M1 AP004609.3-201ENST00000610705 1884 ntBASIC24.43■■□□□ 1.5
SLC44A3Q8N4M1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.42■■□□□ 1.5
SLC44A3Q8N4M1 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SLC44A3Q8N4M1 RARRES2P6-201ENST00000567333 442 ntBASIC24.42■■□□□ 1.5
SLC44A3Q8N4M1 SSSCA1-AS1-201ENST00000567594 614 ntBASIC24.42■■□□□ 1.5
SLC44A3Q8N4M1 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC24.42■■□□□ 1.5
SLC44A3Q8N4M1 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
SLC44A3Q8N4M1 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC24.41■■□□□ 1.5
SLC44A3Q8N4M1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC24.41■■□□□ 1.5
SLC44A3Q8N4M1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SLC44A3Q8N4M1 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.41■■□□□ 1.5
SLC44A3Q8N4M1 AC142381.2-201ENST00000566120 298 ntBASIC24.41■■□□□ 1.5
SLC44A3Q8N4M1 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.4■■□□□ 1.5
SLC44A3Q8N4M1 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
SLC44A3Q8N4M1 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SLC44A3Q8N4M1 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
SLC44A3Q8N4M1 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.39■■□□□ 1.49
SLC44A3Q8N4M1 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC24.39■■□□□ 1.49
SLC44A3Q8N4M1 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC24.39■■□□□ 1.49
SLC44A3Q8N4M1 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.38■■□□□ 1.49
SLC44A3Q8N4M1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SLC44A3Q8N4M1 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.38■■□□□ 1.49
SLC44A3Q8N4M1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC24.38■■□□□ 1.49
SLC44A3Q8N4M1 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SLC44A3Q8N4M1 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SLC44A3Q8N4M1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC24.37■■□□□ 1.49
SLC44A3Q8N4M1 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SLC44A3Q8N4M1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC24.37■■□□□ 1.49
SLC44A3Q8N4M1 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SLC44A3Q8N4M1 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
SLC44A3Q8N4M1 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 UNC93B3-201ENST00000308076 687 ntBASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 AC026271.2-201ENST00000428091 497 ntBASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC24.36■■□□□ 1.49
SLC44A3Q8N4M1 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 AC139426.1-201ENST00000568218 2529 ntBASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SLC44A3Q8N4M1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SLC44A3Q8N4M1 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
SLC44A3Q8N4M1 CLTA-206ENST00000466396 695 ntTSL 2 BASIC24.34■■□□□ 1.49
SLC44A3Q8N4M1 SUDS3P1-201ENST00000505831 966 ntBASIC24.34■■□□□ 1.49
SLC44A3Q8N4M1 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.34■■□□□ 1.49
SLC44A3Q8N4M1 AL031432.3-201ENST00000607698 485 ntBASIC24.34■■□□□ 1.49
SLC44A3Q8N4M1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SLC44A3Q8N4M1 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SLC44A3Q8N4M1 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SLC44A3Q8N4M1 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
SLC44A3Q8N4M1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SLC44A3Q8N4M1 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SLC44A3Q8N4M1 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SLC44A3Q8N4M1 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
SLC44A3Q8N4M1 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
SLC44A3Q8N4M1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC24.32■■□□□ 1.48
SLC44A3Q8N4M1 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SLC44A3Q8N4M1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SLC44A3Q8N4M1 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.31■■□□□ 1.48
SLC44A3Q8N4M1 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms