Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.86■■□□□ 1.41
CXCL12P48061 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CXCL12P48061 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.86■■□□□ 1.41
CXCL12P48061 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CXCL12P48061 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CXCL12P48061 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CXCL12P48061 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.85■■□□□ 1.41
CXCL12P48061 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CXCL12P48061 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CXCL12P48061 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CXCL12P48061 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CXCL12P48061 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
CXCL12P48061 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CXCL12P48061 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CXCL12P48061 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CXCL12P48061 AP004609.3-201ENST00000610705 1884 ntBASIC23.83■■□□□ 1.41
CXCL12P48061 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.83■■□□□ 1.41
CXCL12P48061 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CXCL12P48061 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CXCL12P48061 UNC93B3-201ENST00000308076 687 ntBASIC23.83■■□□□ 1.41
CXCL12P48061 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
CXCL12P48061 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CXCL12P48061 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.83■■□□□ 1.41
CXCL12P48061 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CXCL12P48061 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.4
CXCL12P48061 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.82■■□□□ 1.4
CXCL12P48061 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CXCL12P48061 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
CXCL12P48061 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.82■■□□□ 1.4
CXCL12P48061 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.82■■□□□ 1.4
CXCL12P48061 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
CXCL12P48061 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.81■■□□□ 1.4
CXCL12P48061 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
CXCL12P48061 AC026271.2-201ENST00000428091 497 ntBASIC23.81■■□□□ 1.4
CXCL12P48061 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
CXCL12P48061 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.81■■□□□ 1.4
CXCL12P48061 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CXCL12P48061 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CXCL12P48061 SUDS3P1-201ENST00000505831 966 ntBASIC23.8■■□□□ 1.4
CXCL12P48061 AL136162.1-201ENST00000607711 1078 ntBASIC23.8■■□□□ 1.4
CXCL12P48061 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CXCL12P48061 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CXCL12P48061 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.79■■□□□ 1.4
CXCL12P48061 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CXCL12P48061 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
CXCL12P48061 AC135279.3-201ENST00000610945 1311 ntBASIC23.79■■□□□ 1.4
CXCL12P48061 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CXCL12P48061 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CXCL12P48061 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CXCL12P48061 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CXCL12P48061 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.78■■□□□ 1.4
CXCL12P48061 LGR4-203ENST00000480977 492 ntTSL 2 BASIC23.78■■□□□ 1.4
CXCL12P48061 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.78■■□□□ 1.4
CXCL12P48061 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.78■■□□□ 1.4
CXCL12P48061 MIR6722-201ENST00000617286 78 ntBASIC23.78■■□□□ 1.4
CXCL12P48061 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CXCL12P48061 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CXCL12P48061 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CXCL12P48061 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
CXCL12P48061 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.77■■□□□ 1.4
CXCL12P48061 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.77■■□□□ 1.4
CXCL12P48061 AL031432.3-201ENST00000607698 485 ntBASIC23.77■■□□□ 1.4
CXCL12P48061 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.77■■□□□ 1.4
CXCL12P48061 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.77■■□□□ 1.4
CXCL12P48061 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CXCL12P48061 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CXCL12P48061 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.76■■□□□ 1.39
CXCL12P48061 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.76■■□□□ 1.39
CXCL12P48061 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.76■■□□□ 1.39
CXCL12P48061 MIR5787-201ENST00000611784 55 ntBASIC23.76■■□□□ 1.39
CXCL12P48061 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.76■■□□□ 1.39
CXCL12P48061 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CXCL12P48061 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CXCL12P48061 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CXCL12P48061 AC104564.3-201ENST00000582367 638 ntBASIC23.75■■□□□ 1.39
CXCL12P48061 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CXCL12P48061 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CXCL12P48061 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.75■■□□□ 1.39
CXCL12P48061 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CXCL12P48061 EDA-201ENST00000338901 1233 ntBASIC23.74■■□□□ 1.39
CXCL12P48061 SNX5-217ENST00000606557 1087 ntBASIC23.74■■□□□ 1.39
CXCL12P48061 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.74■■□□□ 1.39
CXCL12P48061 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.73■■□□□ 1.39
CXCL12P48061 AL355001.2-201ENST00000620617 1191 ntBASIC23.73■■□□□ 1.39
CXCL12P48061 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
CXCL12P48061 SRD5A1P1-201ENST00000442297 786 ntBASIC23.72■■□□□ 1.39
CXCL12P48061 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.72■■□□□ 1.39
CXCL12P48061 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.72■■□□□ 1.39
CXCL12P48061 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC23.72■■□□□ 1.39
CXCL12P48061 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.72■■□□□ 1.39
CXCL12P48061 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CXCL12P48061 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.72■■□□□ 1.39
CXCL12P48061 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CXCL12P48061 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CXCL12P48061 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CXCL12P48061 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CXCL12P48061 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
CXCL12P48061 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CXCL12P48061 ST7-205ENST00000393446 2114 ntTSL 5 BASIC23.71■■□□□ 1.39
CXCL12P48061 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms