Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DEPDC1B-205ENST00000512078 1596 ntTSL 211.72□□□□□ -0.536e-6■□□□□ 10.9
YBX3P16989 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.936e-6■□□□□ 10.9
YBX3P16989 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC12.59□□□□□ -0.392e-8■□□□□ 10.9
YBX3P16989 CHD3-201ENST00000330494 7328 ntAPPRIS P4 TSL 1 (best) BASIC10.46□□□□□ -0.742e-8■□□□□ 10.9
YBX3P16989 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.852e-8■□□□□ 10.9
YBX3P16989 WAPL-205ENST00000489996 646 ntTSL 26.73□□□□□ -1.335e-6■□□□□ 10.9
YBX3P16989 USB1-211ENST00000565662 719 ntTSL 422.06■■□□□ 1.126e-6■□□□□ 10.9
YBX3P16989 USB1-203ENST00000539737 1212 ntTSL 2 BASIC21.06■□□□□ 0.966e-6■□□□□ 10.9
YBX3P16989 USB1-210ENST00000565151 886 ntTSL 219.89■□□□□ 0.776e-6■□□□□ 10.9
YBX3P16989 USB1-205ENST00000561743 1135 ntTSL 3 BASIC18.16■□□□□ 0.56e-6■□□□□ 10.9
YBX3P16989 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.476e-6■□□□□ 10.9
YBX3P16989 USB1-212ENST00000566082 3888 ntTSL 210.68□□□□□ -0.76e-6■□□□□ 10.9
YBX3P16989 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.41■■■□□ 2.622e-8■□□□□ 10.9
YBX3P16989 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.332e-8■□□□□ 10.9
YBX3P16989 DIAPH1-214ENST00000524301 561 ntTSL 46.24□□□□□ -1.412e-8■□□□□ 10.9
YBX3P16989 TRAPPC11-206ENST00000509857 548 ntTSL 49.75□□□□□ -0.856e-6■□□□□ 10.9
YBX3P16989 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC18.42■□□□□ 0.541e-6■□□□□ 10.9
YBX3P16989 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.552e-7■□□□□ 10.9
YBX3P16989 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC22.76■■□□□ 1.232e-7■□□□□ 10.9
YBX3P16989 MRPS34-203ENST00000569585 713 ntTSL 217.31■□□□□ 0.362e-8■□□□□ 10.9
YBX3P16989 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.31■■■□□ 2.66e-6■□□□□ 10.9
YBX3P16989 TSG101-203ENST00000535077 685 ntTSL 326.96■■□□□ 1.916e-6■□□□□ 10.9
YBX3P16989 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.876e-6■□□□□ 10.9
YBX3P16989 TSG101-210ENST00000545247 783 ntTSL 326.13■■□□□ 1.776e-6■□□□□ 10.9
YBX3P16989 TSG101-202ENST00000438874 581 ntTSL 1 (best)25.68■■□□□ 1.76e-6■□□□□ 10.9
YBX3P16989 HDHD2-210ENST00000591268 576 ntTSL 425.35■■□□□ 1.656e-6■□□□□ 10.9
YBX3P16989 TMEM11-203ENST00000583264 819 ntTSL 225.31■■□□□ 1.646e-6■□□□□ 10.9
YBX3P16989 TMEM11-205ENST00000584432 1648 ntTSL 225.3■■□□□ 1.646e-6■□□□□ 10.9
YBX3P16989 FGFR4-211ENST00000509511 1341 ntTSL 1 (best)25.23■■□□□ 1.636e-6■□□□□ 10.9
YBX3P16989 HDHD2-212ENST00000591671 557 ntTSL 224.67■■□□□ 1.546e-6■□□□□ 10.9
YBX3P16989 FGFR4-210ENST00000508139 720 ntTSL 524.41■■□□□ 1.56e-6■□□□□ 10.9
YBX3P16989 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.416e-6■□□□□ 10.9
YBX3P16989 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.7■■□□□ 1.386e-6■□□□□ 10.9
YBX3P16989 HDHD2-207ENST00000588940 546 ntTSL 423.57■■□□□ 1.366e-6■□□□□ 10.9
YBX3P16989 HDHD2-203ENST00000587388 566 ntTSL 323.56■■□□□ 1.366e-6■□□□□ 10.9
YBX3P16989 HDHD2-208ENST00000590481 569 ntTSL 423.56■■□□□ 1.366e-6■□□□□ 10.9
YBX3P16989 TMEM11-202ENST00000577419 1246 ntTSL 223.52■■□□□ 1.366e-6■□□□□ 10.9
YBX3P16989 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.236e-6■□□□□ 10.9
YBX3P16989 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.57■■□□□ 1.25e-9■□□□□ 10.9
YBX3P16989 HDHD2-213ENST00000592591 559 ntTSL 422.09■■□□□ 1.136e-6■□□□□ 10.9
YBX3P16989 HDHD2-211ENST00000591480 569 ntTSL 422.09■■□□□ 1.136e-6■□□□□ 10.9
YBX3P16989 NPRL3-203ENST00000422814 512 ntTSL 421.64■■□□□ 1.056e-6■□□□□ 10.9
YBX3P16989 NPRL3-205ENST00000457916 936 ntTSL 521.64■■□□□ 1.056e-6■□□□□ 10.9
YBX3P16989 TMEM11-206ENST00000584732 967 ntTSL 521.27■■□□□ 16e-6■□□□□ 10.9
YBX3P16989 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.89■□□□□ 0.935e-9■□□□□ 10.9
YBX3P16989 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.895e-9■□□□□ 10.9
YBX3P16989 NPRL3-202ENST00000419636 616 ntTSL 520.5■□□□□ 0.876e-6■□□□□ 10.9
YBX3P16989 TSG101-209ENST00000544804 391 ntTSL 320.34■□□□□ 0.856e-6■□□□□ 10.9
YBX3P16989 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.05■□□□□ 0.86e-6■□□□□ 10.9
YBX3P16989 TMEM11-204ENST00000583929 827 ntTSL 319.99■□□□□ 0.796e-6■□□□□ 10.9
YBX3P16989 HDHD2-202ENST00000586546 568 ntTSL 419.9■□□□□ 0.786e-6■□□□□ 10.9
YBX3P16989 HDHD2-204ENST00000587841 788 ntTSL 319.88■□□□□ 0.776e-6■□□□□ 10.9
YBX3P16989 DOT1L-203ENST00000452696 624 ntTSL 319.73■□□□□ 0.757e-7■□□□□ 10.9
YBX3P16989 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.676e-6■□□□□ 10.9
YBX3P16989 NPRL3-204ENST00000456528 794 ntTSL 518.95■□□□□ 0.626e-6■□□□□ 10.9
YBX3P16989 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.626e-6■□□□□ 10.9
YBX3P16989 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC18.61■□□□□ 0.576e-6■□□□□ 10.9
YBX3P16989 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.48■□□□□ 0.556e-6■□□□□ 10.9
YBX3P16989 DOT1L-205ENST00000478937 638 ntTSL 318.43■□□□□ 0.547e-7■□□□□ 10.9
YBX3P16989 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.546e-6■□□□□ 10.9
YBX3P16989 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.546e-6■□□□□ 10.9
YBX3P16989 SMARCD2-204ENST00000450364 993 ntTSL 518.39■□□□□ 0.535e-9■□□□□ 10.9
YBX3P16989 AC012254.2-201ENST00000602459 1443 ntAPPRIS ALT2 TSL 518.22■□□□□ 0.516e-6■□□□□ 10.9
YBX3P16989 HDHD2-205ENST00000588183 2224 ntTSL 1 (best)18■□□□□ 0.476e-6■□□□□ 10.9
YBX3P16989 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.81■□□□□ 0.446e-6■□□□□ 10.9
YBX3P16989 CHD8-208ENST00000555301 918 ntTSL 217.74■□□□□ 0.436e-6■□□□□ 10.9
YBX3P16989 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.396e-6■□□□□ 10.9
YBX3P16989 TSG101-208ENST00000543087 714 ntTSL 317.46■□□□□ 0.396e-6■□□□□ 10.9
YBX3P16989 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.366e-6■□□□□ 10.9
YBX3P16989 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.326e-6■□□□□ 10.9
YBX3P16989 RALGDS-207ENST00000460587 674 ntTSL 316.98■□□□□ 0.316e-6■□□□□ 10.9
YBX3P16989 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.36e-6■□□□□ 10.9
YBX3P16989 NPRL3-209ENST00000483663 932 ntTSL 316.85■□□□□ 0.296e-6■□□□□ 10.9
YBX3P16989 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.77■□□□□ 0.285e-9■□□□□ 10.9
YBX3P16989 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.266e-6■□□□□ 10.9
YBX3P16989 HDHD2-209ENST00000590815 809 ntTSL 316.64■□□□□ 0.256e-6■□□□□ 10.9
YBX3P16989 NOP56-206ENST00000466447 1094 ntTSL 215.99■□□□□ 0.156e-6■□□□□ 10.9
YBX3P16989 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.146e-6■□□□□ 10.9
YBX3P16989 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.066e-6■□□□□ 10.9
YBX3P16989 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.056e-6■□□□□ 10.9
YBX3P16989 RALGDS-213ENST00000493438 4602 ntTSL 215.16■□□□□ 0.026e-6■□□□□ 10.9
YBX3P16989 RALGDS-211ENST00000482648 5596 ntTSL 214.87□□□□□ -0.036e-6■□□□□ 10.9
YBX3P16989 NPRL3-207ENST00000468260 922 ntTSL 514.79□□□□□ -0.046e-6■□□□□ 10.9
YBX3P16989 NPRL3-208ENST00000473674 855 ntTSL 314.76□□□□□ -0.056e-6■□□□□ 10.9
YBX3P16989 RALGDS-208ENST00000469972 5817 ntTSL 1 (best)14.4□□□□□ -0.16e-6■□□□□ 10.9
YBX3P16989 MYO19-211ENST00000613551 556 ntTSL 414.06□□□□□ -0.166e-6■□□□□ 10.9
YBX3P16989 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.166e-6■□□□□ 10.9
YBX3P16989 NOP56-215ENST00000490753 640 ntTSL 213.73□□□□□ -0.216e-6■□□□□ 10.9
YBX3P16989 NR3C1-204ENST00000394466 3245 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.236e-6■□□□□ 10.9
YBX3P16989 RALGDS-203ENST00000372062 3596 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.246e-6■□□□□ 10.9
YBX3P16989 NOP56-205ENST00000462630 859 ntTSL 213.26□□□□□ -0.296e-6■□□□□ 10.9
YBX3P16989 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.376e-6■□□□□ 10.9
YBX3P16989 RALGDS-206ENST00000424572 926 ntTSL 512.61□□□□□ -0.396e-6■□□□□ 10.9
YBX3P16989 MYO19-216ENST00000616207 786 ntTSL 512.45□□□□□ -0.426e-6■□□□□ 10.9
YBX3P16989 LARS2-202ENST00000414984 2800 ntTSL 5 BASIC11.96□□□□□ -0.496e-6■□□□□ 10.9
YBX3P16989 TTC7B-206ENST00000555005 2730 ntTSL 211.89□□□□□ -0.516e-6■□□□□ 10.9
YBX3P16989 EP400-208ENST00000611841 3129 ntTSL 511.65□□□□□ -0.546e-6■□□□□ 10.9
YBX3P16989 TTC7B-204ENST00000554462 525 ntTSL 511.27□□□□□ -0.616e-6■□□□□ 10.9
YBX3P16989 TMEM127-203ENST00000435268 582 ntTSL 3 BASIC11□□□□□ -0.656e-6■□□□□ 10.9
YBX3P16989 NLN-207ENST00000509935 1106 ntTSL 510.5□□□□□ -0.736e-6■□□□□ 10.9
Retrieved 100 of 29,075 protein–RNA pairs in 170.7 ms