RNA–Protein interactions for RNA: ENST00000509857.5

TRAPPC11-206, Transcript of trafficking protein particle complex 11, humanhuman

TSL 4

Gene TRAPPC11, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-206ENST00000509857 AEBP2Q6ZN18 517 aaPredicted RBP36.14■■■■□ 3.38
TRAPPC11-206ENST00000509857 CHIC1Q5VXU3 224 aa35.43■■■■□ 3.26
TRAPPC11-206ENST00000509857 PHF23Q9BUL5 403 aaPredicted RBP31.15■■■□□ 2.58
TRAPPC11-206ENST00000509857 SENP3Q9H4L4 574 aaPredicted RBP30.67■■■□□ 2.5
TRAPPC11-206ENST00000509857 PLPPR3Q6T4P5 718 aa28.79■■■□□ 2.2
TRAPPC11-206ENST00000509857 FOXD1Q16676 465 aa28.42■■■□□ 2.14
TRAPPC11-206ENST00000509857 PPP6R1Q9UPN7 881 aa27.43■■□□□ 1.98
TRAPPC11-206ENST00000509857 ADRA2BP18089 450 aa27.38■■□□□ 1.97
TRAPPC11-206ENST00000509857 PIAS4Q8N2W9 510 aaPredicted RBP26.81■■□□□ 1.88
TRAPPC11-206ENST00000509857 MSH5O43196 834 aa26.19■■□□□ 1.78
TRAPPC11-206ENST00000509857 PPP4R3CPQ6ZMV5 832 aa25.36■■□□□ 1.65
TRAPPC11-206ENST00000509857 SCAF1Q9H7N4 1312 aaKnown RBP25.08■■□□□ 1.6
TRAPPC11-206ENST00000509857 KCNA4P22459 653 aa24.9■■□□□ 1.58
TRAPPC11-206ENST00000509857 MAPK8IP2Q13387 824 aaPredicted RBP24.79■■□□□ 1.56
TRAPPC11-206ENST00000509857 NCBP3Q53F19 620 aaKnown RBP24.74■■□□□ 1.55
TRAPPC11-206ENST00000509857 CNKSR2Q8WXI2 1034 aa24.65■■□□□ 1.54
TRAPPC11-206ENST00000509857 DMRT2Q9Y5R5 561 aa24.51■■□□□ 1.51
TRAPPC11-206ENST00000509857 NPM3O75607 178 aaKnown RBP24.38■■□□□ 1.49
TRAPPC11-206ENST00000509857 RNF216Q9NWF9 866 aaPredicted RBP24.16■■□□□ 1.46
TRAPPC11-206ENST00000509857 HOXD11P31277 338 aaPredicted RBP24.06■■□□□ 1.44
TRAPPC11-206ENST00000509857 DNAJC5BQ9UF47 199 aa23.82■■□□□ 1.4
TRAPPC11-206ENST00000509857 SLC4A1APQ9BWU0 796 aaKnown RBP23.72■■□□□ 1.39
TRAPPC11-206ENST00000509857 POTEDQ86YR6 584 aa23.64■■□□□ 1.37
TRAPPC11-206ENST00000509857 DCAF8L1A6NGE4 600 aa23.29■■□□□ 1.32
TRAPPC11-206ENST00000509857 EHMT2Q96KQ7 1210 aa23.09■■□□□ 1.29
TRAPPC11-206ENST00000509857 SLC4A2P04920 1241 aa23.01■■□□□ 1.27
TRAPPC11-206ENST00000509857 ZBTB22O15209 634 aa22.94■■□□□ 1.26
TRAPPC11-206ENST00000509857 FOXD4L1Q9NU39 408 aa22.91■■□□□ 1.26
TRAPPC11-206ENST00000509857 CSRNP3Q8WYN3 585 aa22.87■■□□□ 1.25
TRAPPC11-206ENST00000509857 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.83■■□□□ 1.25
TRAPPC11-206ENST00000509857 MYCNP04198 464 aaPredicted RBP22.55■■□□□ 1.2
TRAPPC11-206ENST00000509857 U3KPZ7 1027 aaPredicted RBP22.53■■□□□ 1.2
TRAPPC11-206ENST00000509857 RNF39Q9H2S5 420 aa22.47■■□□□ 1.19
TRAPPC11-206ENST00000509857 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.29■■□□□ 1.16
TRAPPC11-206ENST00000509857 HNRNPUL2Q1KMD3 747 aaKnown RBP22.29■■□□□ 1.16
TRAPPC11-206ENST00000509857 SAMD1Q6SPF0 538 aaPredicted RBP22.22■■□□□ 1.15
TRAPPC11-206ENST00000509857 C1QBPQ07021 282 aaKnown RBP22.2■■□□□ 1.14
TRAPPC11-206ENST00000509857 ATXN8OSP0DMR3 200 aa22.15■■□□□ 1.14
TRAPPC11-206ENST00000509857 APLP2Q06481 763 aa22.03■■□□□ 1.12
TRAPPC11-206ENST00000509857 ATF5Q9Y2D1 282 aaPredicted RBP21.9■■□□□ 1.1
TRAPPC11-206ENST00000509857 SPINK5Q9NQ38 1064 aaPredicted RBP21.83■■□□□ 1.09
TRAPPC11-206ENST00000509857 CACNB1Q02641 598 aaPredicted RBP21.72■■□□□ 1.07
TRAPPC11-206ENST00000509857 CAPN15O75808 1086 aa21.71■■□□□ 1.07
TRAPPC11-206ENST00000509857 ZNF219Q9P2Y4 722 aaPredicted RBP21.71■■□□□ 1.07
TRAPPC11-206ENST00000509857 TRHP20396 242 aaPredicted RBP21.61■■□□□ 1.05
TRAPPC11-206ENST00000509857 DSG3P32926 999 aa21.39■■□□□ 1.01
TRAPPC11-206ENST00000509857 POLA2Q14181 598 aa21.32■■□□□ 1
TRAPPC11-206ENST00000509857 ABCB7O75027 752 aa21.3■■□□□ 1
TRAPPC11-206ENST00000509857 ZBTB12Q9Y330 459 aaPredicted RBP21.06■□□□□ 0.96
TRAPPC11-206ENST00000509857 MKRN4PQ13434 485 aaPredicted RBP20.99■□□□□ 0.95
TRAPPC11-206ENST00000509857 FBLN2P98095 1184 aa20.97■□□□□ 0.95
TRAPPC11-206ENST00000509857 FKBP8Q14318 412 aa20.62■□□□□ 0.89
TRAPPC11-206ENST00000509857 OSCARQ8IYS5 282 aa20.62■□□□□ 0.89
TRAPPC11-206ENST00000509857 SPDYE4A6NLX3 237 aa20.53■□□□□ 0.88
TRAPPC11-206ENST00000509857 SPDYE2BA6NHP3 402 aa20.5■□□□□ 0.87
TRAPPC11-206ENST00000509857 SPDYE6P0CI01 402 aa20.5■□□□□ 0.87
TRAPPC11-206ENST00000509857 SPDYE2Q495Y8 402 aa20.5■□□□□ 0.87
TRAPPC11-206ENST00000509857 RBM42Q9BTD8 480 aaKnown RBP20.39■□□□□ 0.85
TRAPPC11-206ENST00000509857 SSUH2Q9Y2M2 353 aa20.37■□□□□ 0.85
TRAPPC11-206ENST00000509857 ZNF692Q9BU19 519 aaPredicted RBP20.36■□□□□ 0.85
TRAPPC11-206ENST00000509857 PROM2Q8N271 834 aa20.32■□□□□ 0.84
TRAPPC11-206ENST00000509857 AKT1S1Q96B36 256 aa20.17■□□□□ 0.82
TRAPPC11-206ENST00000509857 PABPN1Q86U42 306 aaKnown RBP eCLIP20.1■□□□□ 0.81
TRAPPC11-206ENST00000509857 REM2Q8IYK8 340 aaPredicted RBP19.95■□□□□ 0.78
TRAPPC11-206ENST00000509857 FBXO3Q9UK99 471 aa19.9■□□□□ 0.78
TRAPPC11-206ENST00000509857 SPDYE1Q8NFV5 336 aaPredicted RBP19.85■□□□□ 0.77
TRAPPC11-206ENST00000509857 STAG3Q9UJ98 1225 aa19.83■□□□□ 0.77
TRAPPC11-206ENST00000509857 PITPNM1O00562 1244 aa19.72■□□□□ 0.75
TRAPPC11-206ENST00000509857 CLEC11AQ9Y240 323 aa19.65■□□□□ 0.74
TRAPPC11-206ENST00000509857 VASPP50552 380 aaPredicted RBP19.64■□□□□ 0.73
TRAPPC11-206ENST00000509857 PRR29P0C7W0 189 aa19.53■□□□□ 0.72
TRAPPC11-206ENST00000509857 CHRDL2Q6WN34 429 aa19.48■□□□□ 0.71
TRAPPC11-206ENST00000509857 MIER1Q8N108 512 aa19.41■□□□□ 0.7
TRAPPC11-206ENST00000509857 PLCD3Q8N3E9 789 aa19.4■□□□□ 0.7
TRAPPC11-206ENST00000509857 IFNLR1Q8IU57 520 aaPredicted RBP19.37■□□□□ 0.69
TRAPPC11-206ENST00000509857 CREBZFQ9NS37 354 aa19.37■□□□□ 0.69
TRAPPC11-206ENST00000509857 FXR2P51116 673 aaKnown RBP eCLIP19.36■□□□□ 0.69
TRAPPC11-206ENST00000509857 PLEKHG5O94827 1062 aa19.32■□□□□ 0.68
TRAPPC11-206ENST00000509857 PIP4P2Q8N4L2 257 aa19.26■□□□□ 0.67
TRAPPC11-206ENST00000509857 ZBTB47Q9UFB7 747 aaPredicted RBP19.24■□□□□ 0.67
TRAPPC11-206ENST00000509857 MNX1P50219 401 aaPredicted RBP19.22■□□□□ 0.67
TRAPPC11-206ENST00000509857 PRKAR2AP13861 404 aaKnown RBP19.19■□□□□ 0.66
TRAPPC11-206ENST00000509857 KLHL34Q8N239 644 aa19.19■□□□□ 0.66
TRAPPC11-206ENST00000509857 CHADLQ6NUI6 762 aa19.18■□□□□ 0.66
TRAPPC11-206ENST00000509857 SPOCK2Q92563 424 aa19.12■□□□□ 0.65
TRAPPC11-206ENST00000509857 FARP1Q9Y4F1 1045 aaPredicted RBP19.07■□□□□ 0.64
TRAPPC11-206ENST00000509857 NPM1P06748 294 aaKnown RBP eCLIP19.02■□□□□ 0.64
TRAPPC11-206ENST00000509857 AMER1Q5JTC6 1135 aaPredicted RBP19.02■□□□□ 0.64
TRAPPC11-206ENST00000509857 NUBP1P53384 320 aa18.99■□□□□ 0.63
TRAPPC11-206ENST00000509857 RTN4Q9NQC3 1192 aaKnown RBP18.94■□□□□ 0.62
TRAPPC11-206ENST00000509857 RASEFQ8IZ41 740 aa18.86■□□□□ 0.61
TRAPPC11-206ENST00000509857 FAM212AQ96EL1 285 aa18.8■□□□□ 0.6
TRAPPC11-206ENST00000509857 PKD2Q13563 968 aa18.78■□□□□ 0.6
TRAPPC11-206ENST00000509857 GSE1Q14687 1217 aa18.78■□□□□ 0.6
TRAPPC11-206ENST00000509857 POTEHQ6S545 545 aa18.74■□□□□ 0.59
TRAPPC11-206ENST00000509857 CIZ1Q9ULV3 898 aaPredicted RBP18.73■□□□□ 0.59
TRAPPC11-206ENST00000509857 DCAF8Q5TAQ9 597 aa18.71■□□□□ 0.59
TRAPPC11-206ENST00000509857 C19orf67A6NJJ6 358 aa18.69■□□□□ 0.58
TRAPPC11-206ENST00000509857 TRIM41Q8WV44 630 aa18.68■□□□□ 0.58
TRAPPC11-206ENST00000509857 CD44P16070 742 aaKnown RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms